RNA id: AMCG00014642


Basic Information

Item Value
RNA id AMCG00014642
length 3735
RNA type mRNA
GC content 0.48
exon number 32
gene id AMCG00014642
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25004505 ~ 25073710 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCCCCTGCCGAAAGATGAGAGACCTAATCCGGCGGGTAAAGCTAATCTGTTCTCCAAGACATTCCGCGATCACttactTTGGTTGAACCCTTTGTTTCGAATTGGATACAAGAGAAAACTGGAGGAAGATGACATGTACAAAGTGCTTCCAGAGGACAGGTCAGACAGGCTCGGAGAGGAGCTACAGTGGTATTGGGACCAAGAAGTGCTGCAGGCGAAGAAGGATCTTTGTAAACCTATGCTCACTAAAGCTATAGTGAAATGTTACTGGAAATCCTATTCATTATTAGGGATATTTACTCTCGTAGAGGAGACAATCAAAATAATTCAGCCAGTGTTTTTAGGGAAACTGATCCAATATTTTGAGAGAAAGGACCGAAATGATGCGGACGCTCTAAACCAAGCCTATGGATATGCCACAGGTGTTGCTCTCTCGACGTTTGGATTGGCGCTGATTCACCATCTGTATTTTTACCATGTCCAAAGAGCAGGCATGAAAATCCGAGTTGCTCTGTGCcatatgatttttaaaaaggCCCTTTGCCTCAATAGCAGTGCACTAGGGAAGACTACAACCGGTCAAATAGTAAACCTGTTATCCAATGATGTCATCAGGTTTGACGAGGTGACCATCTTCTTGCACTTTTTGTGGGTGGCTCCTCTGCAGGTCGCTGCTGTGATAGCCCTGCTCTGGGAAGAGATTGGCCCATCTTGCCTGGCTGGGATGGCAGTTCTCATTTTTTTGATGCCTTTACAAACATTTTTCGGTCGTTTGTTCTCCTCTCTGAGGAGTAAAACGGCAGCTTTCACAGACAGCAGAATACGCACAATGAATGAGGTTGTGTCTGGAATTCGTATCATTAAGATGTACGCCTGGGAGAAGCCTTTTGCAGAGCTGGTAAATGACGTCCGAAGGAAAGAGATTTCCAAGGTGATCCTAAGCTCCTACCTCCGTGGCATGAACATGGCTTCATTTTTTGTTGCCAGCAAAATCATCTTGTTCATCACTTTCACCACCTATGTGTTGCTTGGGAACACCATTTCAGCCAGTCGTGTCTTTGTAGCCGTGTCCCTGTACAGTGCCATAAggctcactgtgaccctgttCTTCCCAGCAGCTATTCAGACTGCTTCAGAAGCCATGATCAGCATTCGCAGAATAAAGaATTTTCTTTTGCTGGATGAGGTTTCACTGGATGCCCCCACACTGCAGAACGTGTCCTTCACTGTGAAACCCGGGGAGCTTCTCGCTGTGATCGGACCAGTAGGAGCAGGGAAGTCCTCTCTATTGAGTGCCATTTTGGATGAGCTACCCTCAGACAAAGGGGTCGTTAAAGTCAAGGGGGACCTGACCTACGCCGCCCAGCAGCCCTGGGACATGGATATTATGCCAGATGGTGACATGACTGTGATTGGAGATCGGGGGGCCACACTCAGTGGGGGTCAGAAAGCTCGTGTGAACCTGGCCAGagCGGTTTATCAAGATGCTGATATCTACTTGCTCGATGATCCCCTCAGTGCTGTTGATGCCGAAGTAGGAAGACATTTGTTTGAACAGTGTATATGTGGAATATTACGGAATAAACCCAGAATACTAGTGACCCACCAGCTGCAGTATTTGCAATCCGCAGACCAGATCCTCGTACTGAAAGAGGGGCACATGGTTGCCAGAGGAACttacacagagctgcagaggtCGGGGGTGGATTTCACGTCCCTGCTGAAGAAGGAGGCAGAGGACGACCCGCAGGTGGCtgcagagatggccgccagCAACAGCCGCTCGGTGAGGTGTCGCACCATCTCCCAAACGTCCGTCTGGTCCCAGTCTTCCTCAGTGCAGTCTGGGAAGGATGGGGCCGACCAGCTCCCAGCAGAGCAAGTGCAAACAGTCCTGGCTGAAGAGAGTCGCTCTGAAGGAACCATTGGTGTCAAAGTATATTGGAAGTACTTTAAAGCTGGAGCCAACATCCTGGTCCTTTTGTTCCTCCTCTTACTCAATATTTTAGCACAGGCATCATATGTCCTCCAGGACTGGTGGCTGTCTTATTGGGCGACTGAACAGGAGCGGCTAAATGTTACCGAGAACAATCTGAATGGCCACAATGAAAGTCAGTCGTTGGACCTTGACCTTTATTTAGGAGTTTACGCAGGTTTAACCGTGGGCACAATTCTCTTTGGATTTGTTCGAAGTCTGCTGTTCTTTAAAGTCTTCATTAATGCAGCTCAGTCTCTGCACAACCGGATGTTCCAGTCCATAATCAGAGCCCCAGTGAGATTCTTTGACGTAAATCCCATTGGAAGAATCCTGAACAGGTTCTCCAAGGACATTGGCCATTTGGACAGCCAGCTGCCCTTCACGTTTGTGGACTTCATCCAGACGTTCCTGCAGATTGTGGGCGTGGTGGCCGTGGCTGTGGGGGTGATCCCATGGGTTATAATTCCGGTGGCTCCGCTGTTGATCGTCTTCATATTTCTGCGGCGATATTTCCTGCAGACCTCCAGGGATATTAAGCGCCTGGAATCGACCACTCGGAGTCCCGTCTTTTCccttctgtcctcctctcttcAAGGACTATGGACCATTCGTGCCTTTAAAGCAGAAAATcgatttcagaaaatatttgatGACCATCAGGATCTCCATTCAGAGGCCTGGTTTCTATTCCTGACCACATCCCGGTGGTTTGCTGTGCGACTGGATGGCATTTGTGCAGTTTTTGTTACAATTATTGCCTTTGGATCAATTCTTCTTAAAGACAGCATGCAGGCTGGGGAAGTTGGACTAGCCCTGTCCTATGCCGTCACTCTGATGGGGATGTTTCAGTGGGGCGTCCGTCAAAGTGCTGAAGTTGAAAACCTGATGACGTCGGTGGAGAGAGTCTTGGAATACACTGATCTAGACAGTGAAGCTCCATGGGTAACACAGAAACGGCCACCTCAAGAATGGCCAACCCATGGCCAGGTCACCTTTGAGGGAGTCAATTTTGCCTACAGCACCAATGGACCTGTTGTTCTCAAGAATATGAGAGCTGTTTTTAGAGCGAAAGAAAAGgttGGTATTGTAGGAAGAACTGGCGCTGGGAAAAGTTCCCTAATCTCTGCCCTCTTCCGGCTGACTGAACCCGAAGGAAACATCTTCATTGATGGCGTTTTGACGTCTGAAATTGGGCTGCATGATTTACGTCAGAAGATGTCCATAATTCCTCAGGACCCAGTGCTGTTCACTGGCACCATGAGGAAGAACCTTGACCCTTTTAACCAACACACTGATGAGGACCTGTGGAATGCACTCCAAGAGGTGCAGCTGAAGGGAGTGGTGGAGGAACTGCCATGTAAGATAGAGACGGAGTTGGCCGAAGCAGGGTCCAATTTCAGTGTGGGCCAGAGGCAGCTGGTGTGCCTGGCCAGGGCGATCCTCAGGAAGAACTGTATTCTCATTATTGACGAAGCCACGGCAAATGTGGATCCCAGAACAGATGAGTTGATTCAGAAGACAATCCGAGAGAAGTTTAAGGATTGCACTGTGCTCACGATTGCACATAGACTCAACACTATCATCGACAGTGACCGAATACTGGTTCTGGAGGCAGGAAGAATAAATGAATATGATGAGCCCTATGTTCTTCTGCAAAATAATGACAGCATATTCTATAAGATGGTGCAACAGACGGGCAAGGCCGAGGCTGCAGCCCTGCTCGAGACAGCTAAACAGgaaataattgaataa

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05673 ABCC4; ATP-binding cassette, subfamily C (CFTR/MRP), member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89502 lncRNA downstream 848357 24155730 ~ 24156148 (-) True G71593
TU89500 lncRNA downstream 923758 24080548 ~ 24080747 (-) True G71591
TU89492 lncRNA downstream 1298639 23705566 ~ 23705866 (-) True G71583
TU89491 lncRNA downstream 1299085 23705199 ~ 23705420 (-) True G71582
TU89467 lncRNA downstream 1591521 23412616 ~ 23412984 (-) True G71561
TU89670 lncRNA upstream 414516 25488226 ~ 25490651 (-) True G71723
TU89673 lncRNA upstream 434887 25508597 ~ 25508870 (-) True G71726
TU89674 lncRNA upstream 457228 25530938 ~ 25533180 (-) True G71727
TU89693 lncRNA upstream 517108 25590818 ~ 25591551 (-) True G71740
TU89807 lncRNA upstream 953825 26027535 ~ 26028500 (-) True G71835
AMCG00014641 mRNA downstream 42816 24960946 ~ 24961689 (-) True AMCG00014641
AMCG00014640 mRNA downstream 76693 24914303 ~ 24927812 (-) True AMCG00014640
AMCG00014639 mRNA downstream 94223 24900091 ~ 24910282 (-) True AMCG00014639
AMCG00014634 mRNA downstream 679863 23765078 ~ 24324642 (-) True AMCG00014634
AMCG00014633 mRNA downstream 1399774 23603609 ~ 23604731 (-) True AMCG00014633
AMCG00014645 mRNA upstream 56628 25130338 ~ 25143368 (-) True AMCG00014645
AMCG00014647 mRNA upstream 92236 25165946 ~ 25239586 (-) True AMCG00014647
AMCG00014650 mRNA upstream 324120 25397830 ~ 25398834 (-) True AMCG00014650
AMCG00014656 mRNA upstream 635924 25709634 ~ 25729632 (-) True AMCG00014656
AMCG00014659 mRNA upstream 680138 25753848 ~ 25763919 (-) True AMCG00014659
TU87063 other downstream 13342012 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 14206358 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 15687338 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 16620281 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 16845915 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 3256029 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 4315580 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 7189457 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 7523752 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 7523752 32597462 ~ 32619149 (-) False G73127

Expression Profile