RNA id: AMCG00014643


Basic Information

Item Value
RNA id AMCG00014643
length 3680
RNA type mRNA
GC content 0.36
exon number 6
gene id AMCG00014643
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25087014 ~ 25102638 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgTCAGTATTGCAGATTTTGGCATTCCTAGGGTGCATTGCTGGATTGGGATCTAATCTTGGTGCCACAGTTTCAAATGAATGGAAAATCACTAGCAGGGCTTCCTCTGTTATAACGGCAACATGGGTTTTTCAAGGGCTTTGGATGAGCTGTGCAGGTAACGCCATCGGAGCCGTCCACTGCAGAGCACACCATACCATCTTCCAGCTGGAAATTTCAGGCTGGATCCTTGTTTCCTCCACTTTGGCCACTGACTACTGGAAGGTGTCTTCAATTGATGGGACAGTCATCACCACAGCCACGTTCTGGTCCAGCCTCTGGAAGACCTGTGTGACTGACTCCACTGGCGTCTACAACTGCAAGGATTTCCCATCCATGTTGGCACTGGATGGCTATATCCAAGTGTGCAGAGGTCTCATGATTGCATCTGTCTGCTTGGGTTTTTTTGGAGTGATTCTTGCAATGATTGGTATGAAATGTACCAAGATTGGAGGAACCGATAAGACCAAATCTAGAATTGCTGGTTTGGCAGGTGGAACTTTCATAATTGCTGGTCTCTCATCTTTAACTGCCTGTTCTCTGTATGCGCACAGAATCACATCAGAATTTTTTGACCCTACATATGTAGCACAAAAATATGAATTGGGCGCAGCACTGTTTATTGGCTGGGCAGGTTCTGTACTTTTAATTCTTGGAGGTGTGGGCTTCTGCTTCTCATTTGCAGAAGAGGGGGAGCAAAAAAGGAGAGCATACACTTACAGTGGTGCAGCTTCATTCATTTCTTCTCGCACTAAGGTCCACAGCAGACCTGGAGATATTAAAACTGGTGGGGAAAATGGCCAATCTTCAAAGCAGTTTGGAAAAAACGCCTACGTGTGACACAATCATTGAAGggacttatttttttcacagtatTGTTCATCCATAGGTGTGGACCTTTGCAACACAAACTAAAATTGAATCCTTGATTGGGCAGAACAGTTCACAACGAATCATTGTGCCTGTATTCACACCACAGTATTGAAGGATGATCCCTTTCCtttgtgtgtattaaaataagtgcTGGAAGGGTGCGATTAGTCTGTTGGCCTGAAAATACCTACCCTTAAAGTCCTACCATTACCCTAGCTGCCATTCATAGTAGTGGTCTTCAATTCAGTGGGTCTTCATGTGAAACATCATGAGTTTGAAGTTAATTAATGTGTAGTTGTTCAATAAtttcatttgtaataataagaagaaaggaaaaacaagagaaaacaaggaaaacaagttttttttgtaattgtctgCTGTCCCTTTCCAACAAATATACGTTGAAATGGTCTTCAGTAAAGAGAATTGCCTTTTTTTGCTGGAAATTCTATCGTTCATTTTGGCTCCGTACACAACCTCTAGATCACCTTGATGTTACAAATTAACGTATTTCCTGCACCATTAAACACTAGTCTGCTAAAAAAAGGTATTGAAATTGATGTCAGGTTCTCTAGATAACCCAAGGTCCCAAGTGCAGTGACAGAGCATTGTACATGTGAGACCCACTCACCTATAGTGTCACCTAGATTTCTAATCACACTTTCTATCTGCCAGGTTGTAAAAGCAAAGTaagattattttagtttagaaCAGCAGCacctgaaatgcatttcatggaGCGCTAAATCCCAAATAGATCATTTTAATGCTGCATCTGAAGGCCTTGGGAAAGATGGTTCAGGTTAACTATTGAGAAaatccaaattataatttagacaGGACACAAAGTTAAGCAAGTTACAGTGCCATGAGATCTTACATGACCCCAAGCAATAAGGACCTTAGTGTACCATCTCATCCAAAAAGCATAGTCACCATCTGGGGTATTGGTTTGGGATTTctgatgtatttcaaaataaccaAATTAAGCCATTTAGGAATGATTAGAATCCTCAGGTAATACAGATAAAGTTAAAAGGTGCAGGACATTTTAAGGAAagtcaaaaaaggaaaaagaaacatttttaggaaaatacaaaatgttgtaaTCTCAAATTAAGGAACAATCAATGTAGTTTCAGAAGACTCAATTTCATGGCAAAACTTTAACTATGATAAACAACTTGAGATGTTCCATTGTatgatttataaaaacacaatgccTAAGCTTACGTTTTCCCAAAAACCCTTTTTCAGATATATTGAGTAATATCAACATTCAGTGCCAAGCTTGTACAAAGAAAATTCTGTACTGCTTTGCAGTCGTGCCTTTGACCTAATGCAGTGACTCAGCCATTCCCTCAACTGGGATCAAGAAGTGGTTTAGAATCGTTGTGTTACAGCAGTGGAGGTTTTCTGTTGTTGCACAACCttgacatttttcaatttaattatttatttttaaataacattttatccTGGAGAATTATAAACTGATAAGCCTAGTGCCCTACATCATTAGTTTTTTGTAAGATTAAATTGGACATAATACATACTCTATCTGgtataattaaaatttaataaGTAATGCTCAGCATTATGTCCACCTTCCTTGTAACATTAAGAGCATGTTAATGGGAATTAAATCtatgcagaatatattattttcaaatatattactagaaatttaaaatattttataatatgttatataaatgtatataggtCATATTgttgataaatatattataatatactgGAATACAGTGGAATATACTTTATAATAGGTCACTCATAAACTATATAGGTCACGCTTTGACCCACCTgataattacaaattacaaatctggTAATGATGTTAGGTTCCATCTGGCATAGAGGCAATAAGCCTATAGCCAGCAAAAGATCTGGCATCAATACCTGGCttgtaaattcaaaataaaggtGGGAAATTGTCTTTGAAAATATGATATATCTGGCCAAATTCAAGTtgtatattcagaaatatattatgtacattttcaaaacaaacattctaaaacatttatgtattgTCTATTCTTACTGgcaaattgaaaacatatttaaattaatgtttctgttttccttttggtATTCACAACTATAGGTAAGCATTGGTTTGCAGAGGAGTAAAAATCTGTTCACCAGTCCAAAATCTGCTTTTATGATATTAAATGCTTGTACATCTTTTCCAGACCTGTTTGTTAAATGTTAGCATTGAAGTGTAGACAATAATCAACAACTTTCACAAATCACTATGTTGAAGCAGtgtatgttttctgaaaatgaccATAGATTCCATCAAAACAGACAGTGTCAACATCAATGTGTAATTGCTCTTCGGACAGGACAAGAGGTTTCTTTTAAAAGATCATCAATTTGCCTTTATCAGAATTGCATCTACTGTATTTAAACTATAGACATGTAGCATGGTTGTATACAGTATGTTCTACCTGTGAGTTCATGTTCTCAACAGGTTCTACAATAAGCAGGGAAGGAGTTATAGTCAGGGCACTCTCAATATAGTTATGAGCTAAACTTGAAAGTAATTACAATACACTTATAAGGTTAAATTACATGTTATTGAGGAatatatgcaaaaaatataaatatacagtataaacagtgaaatgtatgtgtgttgatacatttattgactacactaaaatgttttatatacctCATTCAAAGCTGTAAtgttaatacaatgtaaatttgcatgataataaaatacaaactataat

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89583 lncRNA upstream 4136 25082659 ~ 25082878 (+) True G71662
TU89508 lncRNA upstream 554053 24523645 ~ 24532961 (+) True G71598
TU89505 lncRNA upstream 753717 24332431 ~ 24333297 (+) True G71596
TU89493 lncRNA upstream 1178365 23908385 ~ 23908649 (+) True G71584
TU89490 lncRNA upstream 1381580 23705163 ~ 23705434 (+) True G71581
TU89593 lncRNA downstream 6518 25109156 ~ 25109378 (+) True G71670
TU89672 lncRNA downstream 430704 25533342 ~ 25534154 (+) True G71725
TU89720 lncRNA downstream 602820 25705458 ~ 25762742 (+) True G71763
TU89729 lncRNA downstream 643165 25745803 ~ 25748408 (+) True G71772
TU89742 lncRNA downstream 667571 25770209 ~ 25770489 (+) True G71784
AMCG00014637 mRNA upstream 149049 24928031 ~ 24937965 (+) True AMCG00014637
AMCG00014638 mRNA upstream 190005 24888533 ~ 24897009 (+) True AMCG00014638
AMCG00014636 mRNA upstream 327717 24692286 ~ 24759297 (+) True AMCG00014636
AMCG00014635 mRNA upstream 701199 24382767 ~ 24385815 (+) True AMCG00014635
AMCG00014632 mRNA upstream 2823014 22247781 ~ 22264000 (+) True AMCG00014632
AMCG00014646 mRNA downstream 21456 25124094 ~ 25126045 (+) True AMCG00014646
AMCG00014644 mRNA downstream 47165 25149803 ~ 25163635 (+) True AMCG00014644
AMCG00014648 mRNA downstream 142775 25245413 ~ 25245961 (+) True AMCG00014648
AMCG00014649 mRNA downstream 270748 25373386 ~ 25374072 (+) True AMCG00014649
AMCG00014651 mRNA downstream 377153 25479791 ~ 25505003 (+) True AMCG00014651
TU89430 other upstream 2231368 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 6812654 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 7638561 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 8617901 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 8954212 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 2732865 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 2766065 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 3199735 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 4748812 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 5661713 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile