RNA id: AMCG00014645


Basic Information

Item Value
RNA id AMCG00014645
length 2481
RNA type mRNA
GC content 0.47
exon number 15
gene id AMCG00014645
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25130338 ~ 25143368 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAATCCGTTTATTGTTCTTGCAGCCTTTTTACAACAACGTATACTACCCATTCCCCTCAGAGACCCCTGGGACCTCAGCAGGGATTCCTTCTTTACTGAACTCTCCTCAGAGCCTGCGCTCCTGCAGCCTCCCCCAGCACTCCTCCGGGGCCTCGGGGCCTGCGATCACAGGCATGACCGAGGCTCACTTCCCTGCCTTTAAATTCCGCGCCCGGCGGGAGAGCGTGGACTGGCGCCGGATCAGTGCCATTGATGTGGACCGGGTGGCCAGCGAGCTGGACTTCCACACCCTGCAGGAGAATATCATGGGCATCACGTTCTGCAGCGTTGACAACGAGCGCTGCCCTTACTGCCAGAACCCGGTGGAGCCTGTGCTGCTGAAGCTCTTCAGATTGCTGCAGCTCACGGTGGAATACCTGCTCCACTCTCAGGAATATCTCACCAGCGGCGTGCATGCAGTGGAGGGGAAGCTGCAGGCCTCGGTGCAGGAGAAAGAACAGATCCAGAAGGAAGCGACCAAGCAGGCGGAGGAGATTAAATTGCTGAAGGAGGAGCTGAAACGGAGGAAGAAGATCATTACCTCCCAGCAGACTATGATCAATGCTGGTGTGAGTAATTACCATAAGTGTCAGCACTGTGATAAAGCGTTCATGAATTATTCCTTTCTGCAAAGCCATATACAGCGTCGCCATCCAGAAGAGTATGATATTGTCatatctgaaaaacagaaaaagctaCAATCTGTTAAATTCCAGGAAGAGATCAACAAACTCAAAGAACAGTTAAATCTGACAAGATCCCAGCTGGAAAATGAACACCAAGCATATATGGTCAAGCTTTCACAGGAACAACAGCATCAGAGGACAAAGGAAGAAGAAACTGTAAAGCGCTTTGAGAAGtggaaggaggaagagaagcATAAACTGGATGGGGAGATTGAGAAGATGAGAGACATGTTCATTAGGGAATTCAAGGAATTATCTGCTAAAAATGCTGTTCTAGAAAATCAACTTTCGGAGATGAAGATGTCCAATTTACAGCTGAAGTCTAACGTCGGAGCTCTACAAGAAGTCAAGGCCCATGAgactgaagaagaagaacacAGAAACTATCAAGAACTGCAGAATCTTAAGGAGAGGTTTAACAAGCAGGAAGCAAGGTGGACCACTAGGGTGCAGAAAATGCGTGATGAATacgagaaggaaaaaaaacagCTTCAGGCTGACCTTCATCAGATGCGATCCTCCCTGGCAGAGGAGCAGAAGCTCAGCAGCAGTTTCTACAGGAAAAAGATGGAAGAACTGGGCCAGAAGGTGCAGGAACAGAACAAGCTGATTACCACTCAGAAGGAGCAGGCAACCTCTGTACATATACTGGATCCTATAGAGGAGCTTTCAGAGGAGGATAAAGaTTCAGCAAGTATTTCTGTGAAGGATGATAAGCAGCTACTTATAAGTGCCTTAAAGAAAAACCCATCATTAACGAAGGAATTACGCCCAATCTTGGAACAGACACTTGTAGAGAAATTGGAATATCTAGGTGTGAAACCAGGAGTTAGTGGCCTTTCCACTGATTACTACAATAAGATAATGTGCCAAATGtcttcacaaaaacagaaatctgcAAAAAAGTTTCAAGATTTTCACAGTGTCAGAGAAACGCTTATCAATAAAGTGGACTTGAAGGTTCAGGAAAAGCGCGCTGCATCAGACTCTGCTGTGCCGAAAAAGAGACCTGaaaatcaaAAGAGGAACAGATCGTGGAGTTTGCCTTCTGCCCGGGTGACACACGTAGTGTCAAAAGCAGGTCTGAAAGGCCAGCCTCCACAGCCGGCCCCTCGGACTAAGACCAACACAGTCCCTAAGACCTCTACACCAAGaACTCCTCCCTTTAGCTCAGATGAAGAATCAGAAGAAGAGTTTCTTCAGAAACCACGTCCAGAGCCCAAAGCTGTGCTCCCAAAAAACCCTCCTGTCGGCTTTACTGAAACAGTGGTCAAGAATCTGGAGAGCGAATCTGACTGGACAGATGACAGTGAGATTGAAGAGCTTGAGCCACAGCCACTGCATCGTCATAAAGACCAGAAAGAAGCTGCTGGAAAACCTGTTCAGAgtgcTGCTGTGAAAGATGTTAAACAACCTGGAACACAAAGAGATCAGAAGAAACTTGCTGGAGCGGTTAAGGTTTTGCCAGAGCAAAATGACGTGTTGCAAAAACTGAAGttttcagaTGCAGATGACGATGACTGGGATATTTCTTCATTGGAAGAAGATAAACCAACAACCGTAAAACTAGACAAATGCCAGCCTGTTTTCAGTGTCAGGAAGAGCTTTGAGTCCAATTCTTCCTATACGAGTGTTTGGGGCACCTCAACTGGGCGAGGACATAAAGGAGGCTTTCATGAAGGGGACACTGTCAGCACTCTTAAAAGCAGCCTCGTGTCCGTCAGTGACTGGAGTGAGTCTTCAGATAATTAA

Function

GO:

id name namespace
GO:0006607 NLS-bearing protein import into nucleus biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0035082 axoneme assembly biological_process
GO:0001568 blood vessel development biological_process
GO:0008589 regulation of smoothened signaling pathway biological_process
GO:0021984 adenohypophysis development biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16470 DZIP1; zinc finger protein DZIP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89502 lncRNA downstream 974190 24155730 ~ 24156148 (-) True G71593
TU89500 lncRNA downstream 1049591 24080548 ~ 24080747 (-) True G71591
TU89492 lncRNA downstream 1424472 23705566 ~ 23705866 (-) True G71583
TU89491 lncRNA downstream 1424918 23705199 ~ 23705420 (-) True G71582
TU89467 lncRNA downstream 1717354 23412616 ~ 23412984 (-) True G71561
TU89670 lncRNA upstream 344858 25488226 ~ 25490651 (-) True G71723
TU89673 lncRNA upstream 365229 25508597 ~ 25508870 (-) True G71726
TU89674 lncRNA upstream 387570 25530938 ~ 25533180 (-) True G71727
TU89693 lncRNA upstream 447450 25590818 ~ 25591551 (-) True G71740
TU89807 lncRNA upstream 884167 26027535 ~ 26028500 (-) True G71835
AMCG00014642 mRNA downstream 56628 25004505 ~ 25073710 (-) True AMCG00014642
AMCG00014641 mRNA downstream 168649 24960946 ~ 24961689 (-) True AMCG00014641
AMCG00014640 mRNA downstream 202526 24914303 ~ 24927812 (-) True AMCG00014640
AMCG00014639 mRNA downstream 220056 24900091 ~ 24910282 (-) True AMCG00014639
AMCG00014634 mRNA downstream 805696 23765078 ~ 24324642 (-) True AMCG00014634
AMCG00014647 mRNA upstream 22578 25165946 ~ 25239586 (-) True AMCG00014647
AMCG00014650 mRNA upstream 254462 25397830 ~ 25398834 (-) True AMCG00014650
AMCG00014656 mRNA upstream 566266 25709634 ~ 25729632 (-) True AMCG00014656
AMCG00014659 mRNA upstream 610480 25753848 ~ 25763919 (-) True AMCG00014659
AMCG00014658 mRNA upstream 631601 25774969 ~ 25851971 (-) True AMCG00014658
TU87063 other downstream 13467845 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 14332191 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 15813171 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 16746114 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 16971748 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 3186371 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 4245922 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 7119799 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 7454094 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 7454094 32597462 ~ 32619149 (-) False G73127

Expression Profile