RNA id: AMCG00014647


Basic Information

Item Value
RNA id AMCG00014647
length 5824
RNA type mRNA
GC content 0.43
exon number 39
gene id AMCG00014647
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25165946 ~ 25239586 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCCCAAAAAGATGTATCTCCTCTTTCTGCTGGTGCTGTCACTGAACACTCCATGCGTTCTTGCCGCCACAAAAGGGGTGACTGCCAGTTTAAGTGCCAAGTGGCCAGCTACGCCACTTCTACTAGAGACCAGTGAGTTTATTGCTGAAGGTGGCGAAGACAAATTTTGGCAGTTTGTGGACACTGTTCGAGAACTTACAGTATATAAGAATGGTGAGTCTGTACGGTCTTATTACAACTTGATAATGAAAAAGGCTGGACAATTTGTTACTGATCTTCAAGTCAATCTTCTCAAGTTTGCCCTGTCCTTGAGAGCGTATTCTCCGGCAGTATATGCATTTCAGCAGGTTGCTGTGGATGAGTCACCACCTGAAAATTGCACTGCTTTTGTGTCCATTCATGGAAAACACACTTGCAGCACCAAAGAAGTTAAGAAGCTCTTGAAAACGGCAGCAGGCAGGCCGAGGCCATACTTGTATAAGAGTGATCACGTATTTCCAGGCATCAATGGCAGTGATCTCCCAGTTGTCATTCTTTACGCTGAAATTGGTACCAATAAGTTTAATACCTTTCACAAGCTGTTGTCCCAGAAAGCTGTAGATGGTAAAATCACGTATGTCCTCCGACACTTTATAGTGaaCCCTAGgatgaataaaatgcatttatctgGATATGGGGTTGAGTTGGCCATAAAAAGCACTGAGTACAAAGCTGTTGATGACAGCCAAATAAAAGATACGAATACTAGACTGAACGAGGAAGATGATGAGGACGATGTCCAAGGATTTCTTTTTGGAAAATTGAAAAAGGTCCATCCTGAGTTGAAGGAACAGTTGAGTGAGCTAAGGAATCACCTGGCCGAGAGCACCAATGACATGGCTCCTTTGAAAGTCTGGGAACTTCAAGACCTTAGTTTCCAAGCAGCAACCCAGATAACCTCTGCTCCAAAACATGACGCTCTGAAGTTGATGAGAGATATTAGTCAGAACTTCCCCATCAAAGCCAGATCACTGACAAGAATGGTTGTAaaccaagaaatgaaaaaagaaattgaGGAAAATCAAAAGTATCTGAGTGAAACATTAGGAATTCAGCCCGGGGAAGCAGGCCTGTTCATCAATGGACTTCATATTGATTTAGATCTTCATAATCCATTCAGTATTCTGGATATTCTTAAGGCGGAAGGAAAGGTCATGGAGGGTCTTCATAACCTTGGTATTAAGGACAGTGACCTCAGTAAACTTTTGAGGCTCACTGTGCAGCCTGTGGAGGACAGCTTCGCCCTGGATATTCGGCATCCTGCTATAATGTGGGTCAATGACATAGAAAAAGACTCCATGTACCGAACGTGGCCTTCTAGCTGTCAAGAGCTACTTCGGACAACATTCCCAGGTGTCATACGTCAAATACGACGCAATTTTTTCAGTCTGGTGCTGTTCATTGATCCATCACAGGAAGACACAGGTGAGCTAGTTAAACTAGCAGAACTTTTCTACCAGCACAAGATTCCTCTCAGGATTGGGTTTGTATTTGTTGTCAATACGGATGACAAAGTTGATGGCTACCTGGATGCAGGAGTTGCACTTTACAGAGTCTTGAACTACATATCTGAGGAGTATGACTTTTCACAGGCTTTTATCTTCATGGTTTCTATGTACAACAAAGTAGAGAGTGGAGAAGGTCTCACTGTAGATACAGTGGTTGGATATTTGAAGAAAAAGTTTCCTAGTGCCAATGCTCCCAGAATTATTGGTGTGGAGTCTCTGAAGAGTGGGCTGGGTGTGTTACCCCAGGCTCTCTTCAATGGGGTTCCCTTCAGTAATGAGGAAATGGACCCTGATGACCTGGAGACCGTTCTTCTTCAGCGCATCATGGATGCTACTAACTTTTTCCAAAGGGCAGTTTTCATGGGTCAGCTGAATGATGAAACCGATGTGGTTGAATTCCTGATGGATCAGCCACATGTGGTGCCACGCATCAATCCTCTCATTCTGAGTCCCCAGAGGAATTATCTGGATCTCACCTCCACCCCAGcttTAGAAGACTGGCTTGACACAATTACTTTCTCATACCTGGACTCCAGAGACAAGAGTGCGGTTATTTCCGAAAATATGAAGTATATCACTAAAACCGATGAGGACATAATTTATGGAGTGACCATCTGGATTATTACGGATTTTGACAAGCCACCTGGGAGGAGACTGCTGCTGAATGCCATGAAACACATGaaaTCTAGCCCAAACACTCGCATAGGGGTGCTAAACAACCCAAGCACCAAGCCAACGGAAGAGAACAGTGTGATTGCCAGGGCAATTTGGGCAGCGCTCCTCACACAGAAAGGAAAGGAACCATTTAATTTCATTGCAAAGCTCATCAAAGAAGAAAGCATTCAGATGCTTGCTCAAGGAACTAAAATGAAGAATTTACTCTTGCCGGGAATGGATAATGATGGTTTTGAGAAGAAGCACAACACCATAAGTGTGGATTTCATCAGAACCCAACAGCACTTCTGCAGAGATGTTCTCAAACTGCTCCCTGGTCAGTCGGCTCTGCTGAGCAACGGAAGGATTTTGGGACcatttgaagaaaaagaagaatttCATGATGAAGATTTTCATCTGTTGGAAAAGATAACCCTGAGCACTTCAGCAGAGAAGATCAAAGTTAAAATCAAGCAGATGGGAGTGAAAGCAAAACAGGCCAGTGATCTAGTTATGAAAGTAGATGCTCTTCTGACTTCTGCTCCCAAGGGAGAATCCAGGAGGGATGTCAGGTTTATTAAAGATAAACAGAGtataGTACAGATACCCCCTCGGGAAGATGAAGTGTACTATCATGTTGTAGCCATTGTGGACCCACTGACTAGGGAGGCCCAGAAGATGTCACCACTGTTAATTGTGCTCGGTCAAGTGATCAATATGAAACTGCAGGTATTTATGAACTGCAAGTCCAAGCTTTCCGAGATGCCTCTGAAGAGCTTCTACCGTTTTGTGCTGGAGCCTGACGTTTCCTTTCTAGCCAATGACACCCTGTCTCCTGGACCGGTGGCTAAGTTCGTGGAAATGCCAGAATCTCCTCTTCTCACCCTGAACATGATCACTCCTGAGAGTTGGCTGGTGGAAGCTGTTAGAAGCTCATATGACCTTGATAACATTCACCTACAAGagGTAAATGGATTTGTGACAGGAGAATATGAACTGGAGTACCTGCTGCTTGAAGGGCACTGCTTTGACATTACGACTGGACAGCCCCCTCGGGGTTTGCAGTTCACTCTCGGGATGAAGAATGATCCTCTCAGGCAAGACACCATAGTGATGGCCAATCTGggtTATTTTCAGTTGAAGGCCAACCCTGGTGCCTGGACCTTGAGGTTACGTAAAGGAAGTCATGAAGGCACAGACTCTCCAGCTGACGCAGACGATGTGATTGTTGTGTTAAACAGCTTCCACAGTAAAATCATCAAAGTCAGGGTGCAGAAAAAACCTGACAAAATAAACGATGACCTCCTTAGTGACGGTTCTGAAGACAAAGGACTGTGGGAATCTTTAACAAGTATTACAGGAGGATCTACATTAGACGATGCCGAGAATAAGAAAGAGGATGTTCTGAACATTTTTTCCGTGGCTTCAGGACATTTATATGAACGCTTTCTAAGaataaTGATGCTGTCGGTTTTGCAACACACTTCAACCCCTGTCAAGTTCTGGTTTCTAAAAAACTACCTCTCACCTACGTTTAAGGAATCGATCCCTCACATGGCGAGAGCGTATGGATTCCAGTATGAGTTGGTGCAATACAAGTGGCCTCGCTGGCTCCACCAGCAGACTGAGAAGCAGAGGATTATCTGGGGATACAAGATCCTGTTTCTGGATGTGCTTTTCCCTCTGGCTGTGGATAAAATAATCTTTGTGGATGCTGACCAGATAGTCAGGAGTGACCTGAAGGAGCTGAGGGATCTGGACCTGGACGGAGCTCCATATGGTTACACACCTTTCTGTGACAGTCGCAAGGAAATGGACGGGTACCGCTTCTGGAAGTCAGGGTACTGGGCGTCTCATTTAGGAAACAGGAAGTATCATATCAGTGCCTTATACATTGTTGATTTGAAGAAGTTCAGAAAGATTGCTGCTGGGGACAGGCTGAGGGGTCAATATCAAGCATTGAGCCAGGATCCAAACAGCTTGTCTAACCTAGATCAGGACCTCCCCAACAACATGATCCACCAGGTGGCAATTAAGTCTCTGCCGCAGGAGTGGTTGTGGTGTGAGACCTGGTGTGACGACGGCTCCAAGGCGACAGCGAAAACTATTGATTTGTGCAATAACCCCAGGACAAAAGAGCCCAAGCTGAAGGCTGCAATGAGAATTGTGCCGGAGTGGGTTGAATAtgataatgaaattaaacagcTACTGAAAAGGGTTGCAGAACAAAAGCCCAATTCAAAAGACAAGAGAGGTGATAAACACGATGAACTTTAGAAGGTATTGTTCATGTGCTGGAGAAATGGAACTGACATTTGCACAGCTAACCCTTCTGTGAAGCTGGAAGATTTTGTCAGTGTACAGATGTACAGTTTCCAAGGCTTTAGCCCGGGAGTCGTATTTGCTGGAGCGGACAAATGCggaaacaagaacaaatatgttgttttgtaaaatattttctacCTTTTTTCTAATTTGACTGTGGTGGAGATAGGACAATATGTACTTTAAAAGTAGTAATCCATGTGTTTCCGGACACCATGTGACCAGTTGTCTGTGACACGTCTGTAATACTTGCTTTCGTCATACAGCATGCATTTAGCTTGTCTGTCTCTTACTATATGGCTTCAAACAGTAAGAAAAGGGGGAACTAAACAATATTGCACTGATAAACCAAGAGTGACAATCACTGCAGTCTTCTCCAAATTACtatcaaatggaaaatgtatcaatattaatatgatcAGGTAGGTTTTGGTGTGTTTTGCTGCATTGGTTTTGCAAGGTGATGAGCTCTAGGTCACAGATTTTCAAatgattatttaaacaaatacggTTTGTCCTGACAACAACAGAAGATACCTGCTATCATGGGTCAACTGGGTAGCCAGTTCACcttcaagaaacattttccagtgccagtctattttaattccagtttaCATGGAGTAAGACATTTAAACTTTAtctcattattgttatttaacaactCATTAGGTcatactttttatattatattgttattgattatttCTTTGTGCAAAGTTGGAGATATAGCCATATCCAGCACTACAGTATAAAGTGAAGGTGCAGTATTCTCTACATGCTTTATTAGTCGGGTCCACCCAGGAAACTGCTCGAGAGCTTTGTGTTACCATCAGGACCTGCATGTGGTATGACAGCAGTGCTTCCAGACTGTGGTACTGCgcacaatatacagtatttttgttttgttttaatgtaatatgaGTGAAAACTGCTTAATTAATTATGGAGTCTTAGcagcataaaatgttattacattattttaaaattaatatgtaattacTATTTGCACACTGACTGTCAAAATTTTGAAACTGCATAACTGTTCTATATACCTCAGTCTGTACAAAACCAGCAAGGAAAACAGCTTTCTGTCCTGTGTCTACAAACCTTTTGGAAAAGGCGAGCTATGCATTGATCCAGGTATCATGGATGATAACGGTTATTGATGTCAAAGTTGTCAATTTTCATTGGACAGGCTATAACCGGTTTCCAGTACTCGATTTAAAACGTCAACCCTGTCTATTTGAGAGTGGCATTCTGTTTTCATCGTGCAGTTAATAAAAGTTTGCCAACA

Function

GO: NA

KEGG:

id description
K11718 HUGT; UDP-glucose:glycoprotein glucosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89502 lncRNA downstream 1009798 24155730 ~ 24156148 (-) True G71593
TU89500 lncRNA downstream 1085199 24080548 ~ 24080747 (-) True G71591
TU89492 lncRNA downstream 1460080 23705566 ~ 23705866 (-) True G71583
TU89491 lncRNA downstream 1460526 23705199 ~ 23705420 (-) True G71582
TU89467 lncRNA downstream 1752962 23412616 ~ 23412984 (-) True G71561
TU89670 lncRNA upstream 248640 25488226 ~ 25490651 (-) True G71723
TU89673 lncRNA upstream 269011 25508597 ~ 25508870 (-) True G71726
TU89674 lncRNA upstream 291352 25530938 ~ 25533180 (-) True G71727
TU89693 lncRNA upstream 351232 25590818 ~ 25591551 (-) True G71740
TU89807 lncRNA upstream 787949 26027535 ~ 26028500 (-) True G71835
AMCG00014645 mRNA downstream 22578 25130338 ~ 25143368 (-) True AMCG00014645
AMCG00014642 mRNA downstream 92236 25004505 ~ 25073710 (-) True AMCG00014642
AMCG00014641 mRNA downstream 204257 24960946 ~ 24961689 (-) True AMCG00014641
AMCG00014640 mRNA downstream 238134 24914303 ~ 24927812 (-) True AMCG00014640
AMCG00014639 mRNA downstream 255664 24900091 ~ 24910282 (-) True AMCG00014639
AMCG00014650 mRNA upstream 158244 25397830 ~ 25398834 (-) True AMCG00014650
AMCG00014656 mRNA upstream 470048 25709634 ~ 25729632 (-) True AMCG00014656
AMCG00014659 mRNA upstream 514262 25753848 ~ 25763919 (-) True AMCG00014659
AMCG00014658 mRNA upstream 535383 25774969 ~ 25851971 (-) True AMCG00014658
AMCG00014663 mRNA upstream 661863 25901449 ~ 25901694 (-) True AMCG00014663
TU87063 other downstream 13503453 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 14367799 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 15848779 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 16781722 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 17007356 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 3090153 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 4149704 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 7023581 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 7357876 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 7357876 32597462 ~ 32619149 (-) False G73127

Expression Profile