RNA id: AMCG00014648


Basic Information

Item Value
RNA id AMCG00014648
length 549
RNA type mRNA
GC content 0.55
exon number 1
gene id AMCG00014648
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25245413 ~ 25245961 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGATAAATCCAATAAGCTGATCCTGGTTCCCATTTTAGCCGTGCTGTTTGTGATGATAGGTTATCAGTATATCTGTCCAGCTGGCAGCAACTCTTGCCACTTCAGGACCGGGGAGAAGTTGAGGGGCATCACTCCTCCAACAACCCAGTCTCCGCCGAGCGCCGATTTCTACCGAGACCAAGAGCTGGAAGAAGACTGCCCTCCCAAATTCGTGCCCAGATTCAACTTCACCGAGAAAGACCTGAAGCGGTACGTGGATTTCAACATCAAGGGGGACGATGTGATTGTGTTCCTGCACATCCAGAAGACGGGGGGGACCACGTTTGGCAGGCATCTGGTGAGGAATATCCGTCTGGAGCAGCCGTGCGATTGCAAACCCGGCCAGAAGAAATGCACCTGTCACCGACCCGGCAAACAGGAGTCCTGGCTGTTCTCCCGATTCTCCACCGGCTGGAGCTGCGGTCTGCACGCCGACTGGACCGAGCTGACCAACTGCGTGCCGGTCATCATGGACAAAAAGGAAGCCCAGAAGATCCGGAGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89593 lncRNA upstream 136035 25109156 ~ 25109378 (+) True G71670
TU89583 lncRNA upstream 162535 25082659 ~ 25082878 (+) True G71662
TU89508 lncRNA upstream 712452 24523645 ~ 24532961 (+) True G71598
TU89505 lncRNA upstream 912116 24332431 ~ 24333297 (+) True G71596
TU89493 lncRNA upstream 1336764 23908385 ~ 23908649 (+) True G71584
TU89672 lncRNA downstream 287381 25533342 ~ 25534154 (+) True G71725
TU89720 lncRNA downstream 459497 25705458 ~ 25762742 (+) True G71763
TU89729 lncRNA downstream 499842 25745803 ~ 25748408 (+) True G71772
TU89742 lncRNA downstream 524248 25770209 ~ 25770489 (+) True G71784
TU89783 lncRNA downstream 706272 25952233 ~ 25959702 (+) True G71817
AMCG00014644 mRNA upstream 81778 25149803 ~ 25163635 (+) True AMCG00014644
AMCG00014646 mRNA upstream 119368 25124094 ~ 25126045 (+) True AMCG00014646
AMCG00014643 mRNA upstream 142775 25087014 ~ 25102638 (+) True AMCG00014643
AMCG00014637 mRNA upstream 307448 24928031 ~ 24937965 (+) True AMCG00014637
AMCG00014638 mRNA upstream 348404 24888533 ~ 24897009 (+) True AMCG00014638
AMCG00014649 mRNA downstream 127425 25373386 ~ 25374072 (+) True AMCG00014649
AMCG00014651 mRNA downstream 233830 25479791 ~ 25505003 (+) True AMCG00014651
AMCG00014653 mRNA downstream 276265 25522226 ~ 25530849 (+) True AMCG00014653
AMCG00014652 mRNA downstream 319196 25565157 ~ 25574008 (+) True AMCG00014652
AMCG00014654 mRNA downstream 329279 25575240 ~ 25592567 (+) True AMCG00014654
TU89430 other upstream 2389767 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 6971053 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 7796960 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 8776300 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 9112611 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 2589542 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 2622742 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 3056412 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 4605489 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 5518390 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile