RNA id: AMCG00014659


Basic Information

Item Value
RNA id AMCG00014659
length 2527
RNA type mRNA
GC content 0.45
exon number 23
gene id AMCG00014659
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25753848 ~ 25763919 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatgcagagaaagacaaagaaaagaagGCTAAATCTAAGACCCACCAAACAGAATGttacatttcttcacatttgACAAATTTACCAGCAGTTGTCCTAATTGTGGAGGTCTGCGGCTACCCCCTCAGCATATTCTTCATTGTCGTCAATGAGTTCTGCGAACGATTCTCCTACTATGGGATGCGAGCTGTGCTCGTCCTGTACTTCCGGTACTTCCTCCGCTGGGACGATGACATGGCAACATCCATCTACCACACTTTTGTGGCCCTCTGCTACCTGACCCCTATCCTGGGAGCTATAGTGGCTGACTCATGGCTGGGGAAGTTCAAGACCATCATCTACTTGTCCATCGTCTACACCATTGGGCAGGTTGTGATGGCCATCAGTGCTGTCCACGACATCACAGACACAAACCATGACGGGAATCCTGACAACCTCACCCTACACATtgccCTCTCCATGATTGGTCTTCTCCTTATCGCTCTGGGCACTGGAGGGATCAAGCCCTGCGTTGCAGCTTTCGGTGGAGACCAGTTTGAGGACCACCAAGAGAAACAGAGAAGCACATTCTTCTCCATATTCTATCTTTCCATCAATGCCGGGAGTCTGCTGTCCACTGTCATTACTCCAATTCTCAGAGCTCAGGAGTGTGGAATCAACAGCCAGCAGAAATGCTATCCTTTGGCCTTTGGTGTTCCAGCAGCTTTGATGGTTATTGCCTTGGTGGTGTTCATCATTGGAAGCAACATGTACACCAAGACAGACCCTAAGGGCAACATCATGCTGAAAGTCTGTAAATGCATTGGGTTTGCCTTGAAGAACAGATGGAGGCACAGAGGTAATGAGTTCCCCAAAAGAGAGCATTGGATGGACTGGGCCACAGAAAAGTATGATAATCTTCTTATAGCTCAGATCAAGATGGTTTTGAAAGTGCTGTTCTTGTACATCCCACTCCCCATGTTTTGGGCACTGTTTGATCAACAGGGATCAAGATGGACACTGCAAGCCACCACCATGGATGGAAACTTTGGAGCGATTGTAATTCAGCCAGACCAGATGCAGaCTGTTAACCCAATCCTTATCTTGGTATTGGTACCAGTTGTGGATGGGCTTCTCTATCCCTTAATAGAAAAGTGCCACCTGAACTTCACGCCGCTGAGGAAAATGACTGTGGGGATGTTGCTTGCGGCCATAGCTTTCGTTGTGGCAGCGCTGGTCCAGATCCAGATCGACACAACCCTTCCGAATTTCCCCGGAGCAGGCCAAACTCAGCTCAAAGTCTTGAACATGGGTGATGTCCCCTTGACTTTTGACGTTAGGGATACCAGTCAAACGTTCACAGTTCAACCATTTGAGGACATTGGTTATCAACAAATCCTAACCAAAGATTTGTCTAGTTTATCTTTCACCGATGGAACAAATGCTACGAGCCTGAGTTTAACCTTCCAGAGTGGAGCTCGTCAGTCACTactcataaacaaaaataaacaaattaagttgATTGATGACATTAATTCCAAGCCAGAGCAAGGAAACAATGCAATAAGATTTGTGAACTCCTTCAGTACAACGTTGAATATTTCAACAGGGGCTGGAAATTTGGGAATGATTGAGCCCTTTTCACAGTCTAATTACAGCCTGCTGAAAGAAGGACAGAACACCTTTCAGATTGAAAACGGTGCAATCCAATGTGTGGCATCAAGAAGCTTTGGATTCGGAAGCTCTTTCACTGTTATCATCTCGGAAATGTGTACAACTCAAGACGGGGAAATACCAGTTAACGGCATCCATTTTGTGGAAGACATCAAACCCAACACTATACACATGGCCTGGCAGATTCCACAGTACTTCCTCATGACAGCCGGTGAGGTTGTCTTCTCAGTCACCGGGCTGGAGTTCTCCTACTCGCAGGCACCTAGCAACATGAAATCCGTCCTGCAGGCAGGCTGGCTGTTCACTGTGGCTGTTGGAAACATAATTGTGCTGATTGTAGCAGAAGCTGCCCAGCTCCCTGATCAGTGGGCCGAATACATCCTCTTTGCTGCACTCCTCATCGCTGTCTGCATCGTTTTTGCCATCATGGCCTACTTCTACACCTATGTGGACCCCACCGAGATTGAAGCCCAGTTTAGCAAGGAAGACCAGAAAAACGAACTTGAGATGGACAAAACGCAGAGTAATGATTATGAAGACGTTGATATTAAACAGACCAAGATATAAACCTGGAAAagagttttttaaatgtacagtgtttattttttcttttaagaaaaatatgaagTGGTGAACTTTAATAATGAAAAGTAGCATCTACAGCAACATTTCTAACTTACCTAATGTGGATAAGGGCAGGTGAGACTTATGTAAAGGCAGTCAGCATTAACAGAGGGTTATTTGATGTTAAAGATTGGCAAAgtttcctctcatttgtaacattttttttcctgttattatgtttgtgtatatatatatatatatatatatatatgtgtgcaacTATCCAGGTTTGGAATACAGGACTAACGAA

Function

GO:

id name namespace
GO:0006857 oligopeptide transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14206 SLC15A1, PEPT1; solute carrier family 15 (oligopeptide transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89693 lncRNA downstream 162297 25590818 ~ 25591551 (-) True G71740
TU89674 lncRNA downstream 220668 25530938 ~ 25533180 (-) True G71727
TU89673 lncRNA downstream 244978 25508597 ~ 25508870 (-) True G71726
TU89670 lncRNA downstream 263197 25488226 ~ 25490651 (-) True G71723
TU89502 lncRNA downstream 1597700 24155730 ~ 24156148 (-) True G71593
TU89807 lncRNA upstream 263616 26027535 ~ 26028500 (-) True G71835
TU89847 lncRNA upstream 457275 26221194 ~ 26221397 (-) True G71871
TU89849 lncRNA upstream 471492 26235411 ~ 26235615 (-) True G71873
TU89850 lncRNA upstream 479625 26243544 ~ 26243813 (-) True G71874
TU89851 lncRNA upstream 501812 26265731 ~ 26266216 (-) True G71875
AMCG00014656 mRNA downstream 24216 25709634 ~ 25729632 (-) True AMCG00014656
AMCG00014650 mRNA downstream 355014 25397830 ~ 25398834 (-) True AMCG00014650
AMCG00014647 mRNA downstream 514262 25165946 ~ 25239586 (-) True AMCG00014647
AMCG00014645 mRNA downstream 610480 25130338 ~ 25143368 (-) True AMCG00014645
AMCG00014642 mRNA downstream 680138 25004505 ~ 25073710 (-) True AMCG00014642
AMCG00014658 mRNA upstream 11050 25774969 ~ 25851971 (-) True AMCG00014658
AMCG00014663 mRNA upstream 137530 25901449 ~ 25901694 (-) True AMCG00014663
AMCG00014662 mRNA upstream 137985 25901904 ~ 26035827 (-) True AMCG00014662
AMCG00014666 mRNA upstream 390145 26154064 ~ 26160288 (-) True AMCG00014666
AMCG00014675 mRNA upstream 572256 26336175 ~ 26336979 (-) True AMCG00014675
TU87063 other downstream 14091355 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 14955701 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 16436681 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 17369624 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 17595258 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 2565820 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 3625371 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 6499248 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 6833543 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 6833543 32597462 ~ 32619149 (-) False G73127

Expression Profile