RNA id: AMCG00014669


Basic Information

Item Value
RNA id AMCG00014669
length 1578
RNA type mRNA
GC content 0.48
exon number 14
gene id AMCG00014669
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26373224 ~ 26389223 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCTGGAAAGGCAAGCCAAGAGCGACTAATCTGGAGAGACTGGAGTCGGTTATGAGCCAATTTTCTGGGAGTTTAGATCACTATGACCTGCAGGATGACACGGATGAGCTAGATTTAAGCTGGCATACTGATCAGTGTGATGGAAAACCTTCAGAGTCCAGAAAAATTCCATTCCATGCAATATACAGCCTTCTGCCTTTCAAAGCTCTGGAATGTCGAATTTTCCTTGAGCAAGTGCCCATCTTTGTCCGAGTGACAGACGTAGAAAGGTTTACTTCAACTACAAGGGTCCTGAATCCCAACCTCTACACTATCGAGCTCAGCCATGGGGAGTTCACATGGACAATCAAACGTCGTTTCAAGCATTTCCAGGCCCTGCATCAGGAGCTCCTGAAATTCAAGGCCCTGCTAAAAATCCCACTGCCAACCAGAACTCACACGGTTCGGAGAAGATCCTTCAAAGGCCTAAAACGATTTCAAGGAGGACATATCCCCACTCTGCCACGGAGACCAGATGCCATGGTGAAAGAGGAACAGCTGACCAGTAGAAAGcTCGAATTCTTGGAAGTGAGTCAAATATCCTTTATTCAGGATCTTGGTCCGAAGGGAAtTGAGGGGCTTATCTTGAAGAAGTCAGGGGGGAATACCTTCCCTGTCTGTTACTGGTGTGGCTCCAACAGTGTTTGCTACAGGTGGTCAAAGAGATGGTTGGTGGTAAAAGACTCCTTTGTTCTGTATATGAGGCCTGAGGATGGCCAAGTTGGGTCTGTCATTCTGTATGATAAGGGATTCAGCATCAAAACAGGGACCAAAGAAACAGGAATTAAACATGGAGTAACAATTGAGAACCTTTCAAGGACACTTACCATCAAATGCTCCACATACAGACAGGCACGGTGGTGGGGGCAGTCCATTCACGAGTTCGCACAGCAGTACGGACAGGACTTCATGAAAGAAAACCGCCACGGGTCGTTTGCTCCTGTCCAGGAAAACACATTGACCAAATGGTTTGTCAATGCAGCTGGCTACTTTGACACTATTGCTGATGCTTTAGAAGCTGCCAAGGAGGAGATATTCATCACCGGCTGGTGGTTGAGCCCAGAAATCTTTCTGAAAAGGCCAGTTATGGATGGGAATACCTGGAGACTGGATTGTGTCCTCAAACGGAAAGCTGAACAAGGAGTACGAATATGTATCCTCTTGTACAAGGAAGTTGAAGTAATTCTCGGCCTTAACAGTGAATACACCAAGAAAACCCTCATGGGACTGCACCCAAACATCAGGGTCATACGGCATCCCGATCACGTCCCCTCCACTGTGCTGCTCTGGGCGCACCATGAAAAGACAGTGGTGATTGACCAGTCTGTGGCATTTCTCGGTGGCATTGACCTGGCCTATGGCAGATGGGATGACCACCACCATCGACTAACTGACGTGGGAAGTGTAAGAAGGACTCCTCAGCCAAGTCCTGTGCTTTCTCCGAAACTAACCCAGGTTACCTGGGGAAAGAATAATTACCCTACATCCTGCACACCTCCAATGAATAAGAACACTGCAGCACCAGAAGCAGCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89834 lncRNA upstream 141659 26231219 ~ 26231565 (+) True G71859
TU89798 lncRNA upstream 362224 26010799 ~ 26011000 (+) True G71826
TU89783 lncRNA upstream 413522 25952233 ~ 25959702 (+) True G71817
TU89742 lncRNA upstream 602735 25770209 ~ 25770489 (+) True G71784
TU89729 lncRNA upstream 624816 25745803 ~ 25748408 (+) True G71772
TU89946 lncRNA downstream 515654 26904877 ~ 26911237 (+) True AMCG00014687
TU89956 lncRNA downstream 563073 26952296 ~ 26953253 (+) True G71963
TU89992 lncRNA downstream 637552 27026775 ~ 27027272 (+) True G71995
TU90084 lncRNA downstream 1085841 27475064 ~ 27479444 (+) True G72072
TU90207 lncRNA downstream 1851343 28240566 ~ 28297484 (+) True G72169
AMCG00014668 mRNA upstream 37863 26318031 ~ 26335361 (+) True AMCG00014668
AMCG00014667 mRNA upstream 128766 26203883 ~ 26244458 (+) True AMCG00014667
AMCG00014664 mRNA upstream 200750 26168461 ~ 26172474 (+) True AMCG00014664
AMCG00014665 mRNA upstream 249456 26085859 ~ 26123768 (+) True AMCG00014665
AMCG00014660 mRNA upstream 320681 26036433 ~ 26052543 (+) True AMCG00014660
AMCG00014670 mRNA downstream 9 26389232 ~ 26409091 (+) True AMCG00014670
AMCG00014676 mRNA downstream 196258 26585481 ~ 26588394 (+) True AMCG00014676
AMCG00014677 mRNA downstream 235538 26624761 ~ 26628707 (+) True AMCG00014677
AMCG00014681 mRNA downstream 470510 26859733 ~ 26866240 (+) True AMCG00014681
AMCG00014682 mRNA downstream 480003 26869226 ~ 26881796 (+) True AMCG00014682
TU89430 other upstream 3517578 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 8098864 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 8924771 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 9904111 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 10240422 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 1446280 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 1479480 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 1913150 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 3462227 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 4375128 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile