RNA id: AMCG00014670


Basic Information

Item Value
RNA id AMCG00014670
length 1941
RNA type mRNA
GC content 0.47
exon number 14
gene id AMCG00014670
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26389232 ~ 26409091 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAGTCCCAGAGAGGTCACTAACCAGAGCCTGTCCCTGCGCTCCAGCGATTCGGGGTCATTTCGGACACAGTATTCCTTAACTTTGCCTCACGTCTACCTTTCTGAAATATTTCTAGAAACAAGCTCCCTCAGAAGTCACATTAGTAGCAATGAACTCTGTGGAGAAGCCCGGTTCTGGCATGGGAAGGACTACTGTAACTTCATCCTCAAGGACTGGGTGAAACTGAACAAACCTTTTGATGaCTTCATTGATCGGTATAAAACCCCAAGGATGCCCTGGCATGATATTGGAGTGGTGGTACAAGGCAAGGCAGCCCGAGACATTGCCAGGCACTTCATTCAGAGATGGAACTTTACAAAGCTGGTGAAAAAACGTTCAGGAGCAACTTATTACCCCTGTTTACTACCCAAGTCCCTCTCTGCACCTGCGGACTTCTCTCTGGATATGGGCAAATGCACCTCAGCAAATGTGCAGGTCAGTACTCTGATTAAACTGTATGAAGTGTTTGTCTGTGAGAGGTTGAGAATCCCTTCATTTGGGACAGACTtgctcttctgtgttttttcttattcaatCCAATTCCAGGTTTTGaggtctgtgtgtcagtggtcCATCGGCACAAAAATCCACGAGGAGTCCATTCACCTGGCATACGTGTCAGCGATTGGCAAGagcaagcattttatttatattgagAATCAGTTTTTCATCAGCTGTGCAGACAAAACCATTCACAATGGCATTGGTGATGCACTTATCGAGAGAATATTAAGAGCTTACagTCTGTTCAATgacaatgaaataataattggcCACAGGGAGAAGAAGAAATTCAGAGTGTATGTAGTGATGCCTCTCTTGCCGGGTTTTGAAGGAGATATCTCTACTGGAGGAGGACAGGCCATCAAGGcaatcatgtattttaattacagGACGATGTGCAGAGGGGAGCACTCCATCATCGAGAAACTCAAATGTGTGAATTGCTGGATCAACTACATCTCCTTCTGTGGGTTGAGGACTCACGCTGACCTGGACGGCAAGCTGGTCACTGAGCTCATCTACGTGCACAGCAAACTGATGATAGTTGATGACAACACTGTCATTATCGGCTCTGCCAACATTAATGACAGAAGCATGCTAGGCAAGCGAGACAGCGAGATGGCGGTGATTGTGGAAGACACAGAGTTCCTTCCCTCTGTAATGGATGGAGAAAACTACCAAGCTGGAAGATTTGCCTTTTCACTCCGTGTCGAGTGCTTTAGGTTGGTTCTTGGGCTCCTGGAAGACGTAAGCGTGGATGTCAGTGATCCCATCAGTGACCGATTCTACAAGGAGGTCTGGATGGTGACGGCTGCGAAGAACGCCAGTGTGTATGACAAGGCAAGTGGCAGTCTTCAGGCTTTTGTGTTCCGGTGTGTGCCCACTGACGCGGTGCCCAACAACAAGATCCTGAGGGAGTATATGTCCCGGCCCTTCATGGCCACGGAGGAGCCCATGCTTGCCTGCGAGGAGCTCAGGAAGATCCGGGGATTCCTTGTCCAGTTCCCGTTCTACTTCCTGTCAGAGGAGAACCTCTATCCCTCGATCAACTCCAAAGAAGGCATGATGCCGGTGGAACTGTGGACTACTCCATTTACCTCAGGTACCTTTCTTAACAAACAGCAGTTCCAGCAGagtgtgtgtgaatttaaCCTTATTCTGAAACATATCTTACCTCAGGACATCATGAAAGGTGACGTCCCCCCCGTTATGCAGTCTCTCCATCTCGTAGCACATGTGCTTGAACAGGAGTTTATCTTTATCCAGATCGACCTCCAACCTCCCTCTCAGAAGCCGCAGCAGAAACTTTACCCTAACGGTGTTTATCCGGTGTACAGAAAGGAGGCAGCACCTGTGGAAagaaccagcatgaaaacagaaaatattaattaa

Function

GO: NA

KEGG:

id description
K01115 PLD1_2; phospholipase D1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89834 lncRNA upstream 157667 26231219 ~ 26231565 (+) True G71859
TU89798 lncRNA upstream 378232 26010799 ~ 26011000 (+) True G71826
TU89783 lncRNA upstream 429530 25952233 ~ 25959702 (+) True G71817
TU89742 lncRNA upstream 618743 25770209 ~ 25770489 (+) True G71784
TU89729 lncRNA upstream 640824 25745803 ~ 25748408 (+) True G71772
TU89946 lncRNA downstream 495786 26904877 ~ 26911237 (+) True AMCG00014687
TU89956 lncRNA downstream 543205 26952296 ~ 26953253 (+) True G71963
TU89992 lncRNA downstream 617684 27026775 ~ 27027272 (+) True G71995
TU90084 lncRNA downstream 1065973 27475064 ~ 27479444 (+) True G72072
TU90207 lncRNA downstream 1831475 28240566 ~ 28297484 (+) True G72169
AMCG00014669 mRNA upstream 9 26373224 ~ 26389223 (+) True AMCG00014669
AMCG00014668 mRNA upstream 53871 26318031 ~ 26335361 (+) True AMCG00014668
AMCG00014667 mRNA upstream 144774 26203883 ~ 26244458 (+) True AMCG00014667
AMCG00014664 mRNA upstream 216758 26168461 ~ 26172474 (+) True AMCG00014664
AMCG00014665 mRNA upstream 265464 26085859 ~ 26123768 (+) True AMCG00014665
AMCG00014676 mRNA downstream 176390 26585481 ~ 26588394 (+) True AMCG00014676
AMCG00014677 mRNA downstream 215670 26624761 ~ 26628707 (+) True AMCG00014677
AMCG00014681 mRNA downstream 450642 26859733 ~ 26866240 (+) True AMCG00014681
AMCG00014682 mRNA downstream 460135 26869226 ~ 26881796 (+) True AMCG00014682
AMCG00014680 mRNA downstream 477396 26886487 ~ 26890130 (+) True AMCG00014680
TU89430 other upstream 3533586 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 8114872 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 8940779 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 9920119 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 10256430 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 1426412 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 1459612 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 1893282 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 3442359 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 4355260 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_01570544_01595199.mRNA True 3960 mRNA 0.46 26 CI01000009 1570079 ~ 1595466 (+)