RNA id: AMCG00014676


Basic Information

Item Value
RNA id AMCG00014676
length 420
RNA type mRNA
GC content 0.50
exon number 3
gene id AMCG00014676
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26585481 ~ 26588394 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATGGCCTTTGCGACTGTGGGAAGTGTATATGCGATGACAACTGGTTTGGCGATGCCTGTCAGCACCAGGAGGACTGTAACCTTTCgaagaagaaaagtaaagagTTATGCAGGAACCCACAAGGAGTGGTTTGTTCTAATGCAGGCTCCTGTCACTGTGGCAGCTGCATGTGTAAAAACCCAGACGGCAAGGGCCTGATTTACGGGAAATTCTGCGAGTGTGACGATGGGGAATGCCTGGACGAGGAAACCGGAGAGCTGTGCGGAGGCCATGGAAAGTGTTACTGTGGAAACTGTTACTGTGCGGCTGGTTGGCATGGAGATAAATGTGAATTCCAGTGTGACATCAGCCCACGGGAGAGCAAAAGGAGATGCACATCTCCAGATGGCAAGATCTGTAGCAATCGAGGTCTGtcttaa

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89834 lncRNA upstream 353916 26231219 ~ 26231565 (+) True G71859
TU89798 lncRNA upstream 574481 26010799 ~ 26011000 (+) True G71826
TU89783 lncRNA upstream 625779 25952233 ~ 25959702 (+) True G71817
TU89742 lncRNA upstream 814992 25770209 ~ 25770489 (+) True G71784
TU89729 lncRNA upstream 837073 25745803 ~ 25748408 (+) True G71772
TU89946 lncRNA downstream 316483 26904877 ~ 26911237 (+) True AMCG00014687
TU89956 lncRNA downstream 363902 26952296 ~ 26953253 (+) True G71963
TU89992 lncRNA downstream 438381 27026775 ~ 27027272 (+) True G71995
TU90084 lncRNA downstream 886670 27475064 ~ 27479444 (+) True G72072
TU90207 lncRNA downstream 1652172 28240566 ~ 28297484 (+) True G72169
AMCG00014670 mRNA upstream 176390 26389232 ~ 26409091 (+) True AMCG00014670
AMCG00014669 mRNA upstream 196258 26373224 ~ 26389223 (+) True AMCG00014669
AMCG00014668 mRNA upstream 250120 26318031 ~ 26335361 (+) True AMCG00014668
AMCG00014667 mRNA upstream 341023 26203883 ~ 26244458 (+) True AMCG00014667
AMCG00014664 mRNA upstream 413007 26168461 ~ 26172474 (+) True AMCG00014664
AMCG00014677 mRNA downstream 36367 26624761 ~ 26628707 (+) True AMCG00014677
AMCG00014681 mRNA downstream 271339 26859733 ~ 26866240 (+) True AMCG00014681
AMCG00014682 mRNA downstream 280832 26869226 ~ 26881796 (+) True AMCG00014682
AMCG00014680 mRNA downstream 298093 26886487 ~ 26890130 (+) True AMCG00014680
AMCG00014684 mRNA downstream 302338 26890732 ~ 26900814 (+) True AMCG00014684
TU89430 other upstream 3729835 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 8311121 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 9137028 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 10116368 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 10452679 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 1247109 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 1280309 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 1713979 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 3263056 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 4175957 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073292 False 1411 mRNA 0.52 8 NC_007120.7 31752628 ~ 31810803 (+)
grasscarp (Ctenopharyngodon idella) CI01000009_01692563_01725364.mRNA True 1986 mRNA 0.47 13 CI01000009 1692563 ~ 1725364 (+)