RNA id: TU89946



Basic Information


Item Value
RNA id TU89946
length 1078
lncRNA type sense_over
GC content 0.40
exon number 3
gene id AMCG00014687
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26904877 ~ 26911237 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTACCTTACACAGACCCTGATTGGCTGACGCCAAACCGCGGCGGAGAGGGGACGTTGCAAGCTGTCTatgctattcttttttttacatgtcAATTACTTaaaactgtgtatttaaataaaatatacaacataatGCATATCAGTCggtaaaacaaacactgagaAGCATGAGTCTAGATTAATCTGCATTGAATGTTGGGGAAGCTGAAATTAAGGATCAGGTCTTCTCTCCCTGTGACAGGAGAGCCTGCATGGCACAAAAGGTAAAGTCCATGGAAGCACACAGACAAATGTTCAACGCAGGAATGAACGGACATTTACAATGTGCCTTCTGTAGCTACCAGTGTGTTAGCAATGAGACCTTCCAGATTCATATGGGAATCAAAGTGGATCGGAAGACTTATCCTGTTTTCTATAACACTAATCCGTCTCAGAGTGCAAGGCGGCCTGCGGACTGGAGGCTATTCAATTACAGGTGATCACTCTCGGCTGGTATGATTCACTCTTCTCAGCCGAGCTGGGCAACCAAAGTGAAGCAGATCCACTGGGGACTTGAGCCTCCAACCCTCTGGTAATGAGTAATAGCATCCGAGTCAGTGCTGCACTCTGCCCTTCATTTCATATGCATACGGACATTGCTTTACTCTGTGATTATCCCATTGCCAGACAGGAAAAATGAATTCCCAGGTACATAAGCTGGTGTGGAATTAAGCTCCTGCCTTTCACTCATTATATCTGTAACATTCTTTTTTATAGTTCTCTAATTCCCAACATGCTCTTCTTTTTGTACATCTTGTGTCCCCTAGCTGTGTCTATTGTCCAAATCAAGAACTGTTGTTGAATACTCTACCAGCActtatttactgttttgttttgttttataatttgtcaTTTCAGTCTACATTATTCCCCCGGCTGGATATCAACTCTACTATAACTGTAACTCTGTTAGTTTCATTTGTTATTCTAATTTATGGTTTTCCAGGTGCTCTTTTTATGTAAAGTAGTATGCATTTTTTGTCAAACATGCAGTATtggattattttacattaaattatgttttgaagTCACACTCTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU89834 lncRNA upstream 673312 26231219 ~ 26231565 (+) True G71859
TU89798 lncRNA upstream 893877 26010799 ~ 26011000 (+) True G71826
TU89783 lncRNA upstream 945175 25952233 ~ 25959702 (+) True G71817
TU89742 lncRNA upstream 1134388 25770209 ~ 25770489 (+) True G71784
TU89720 lncRNA upstream 1142135 25705458 ~ 25762742 (+) True G71763
TU89956 lncRNA downstream 41059 26952296 ~ 26953253 (+) True G71963
TU89992 lncRNA downstream 115538 27026775 ~ 27027272 (+) True G71995
TU90084 lncRNA downstream 563827 27475064 ~ 27479444 (+) True G72072
TU90207 lncRNA downstream 1329329 28240566 ~ 28297484 (+) True G72169
TU90212 lncRNA downstream 1386432 28297669 ~ 28300813 (+) True G72173
AMCG00014684 mRNA upstream 4063 26890732 ~ 26900814 (+) True AMCG00014684
AMCG00014680 mRNA upstream 14747 26886487 ~ 26890130 (+) True AMCG00014680
AMCG00014682 mRNA upstream 23081 26869226 ~ 26881796 (+) True AMCG00014682
AMCG00014681 mRNA upstream 38637 26859733 ~ 26866240 (+) True AMCG00014681
AMCG00014677 mRNA upstream 276170 26624761 ~ 26628707 (+) True AMCG00014677
AMCG00014685 mRNA downstream 14597 26925834 ~ 26961877 (+) True AMCG00014685
AMCG00014683 mRNA downstream 55508 26966745 ~ 26974382 (+) True AMCG00014683
AMCG00014690 mRNA downstream 66198 26977435 ~ 26980300 (+) True AMCG00014690
AMCG00014691 mRNA downstream 410377 27321614 ~ 27337656 (+) True AMCG00014691
AMCG00014701 mRNA downstream 571851 27483088 ~ 27491264 (+) True AMCG00014701
TU89430 other upstream 4049231 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 8630517 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 9456424 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 10435764 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 10772075 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 924266 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 957466 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 1391136 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 2940213 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 3853114 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile