RNA id: AMCG00014688


Basic Information

Item Value
RNA id AMCG00014688
length 1421
RNA type mRNA
GC content 0.44
exon number 12
gene id AMCG00014688
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26980121 ~ 27034019 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAAGTATGTGGCTGCTGCCATGATGAAGAAAGCATCGACACTCCTTTCCATCCAGATGTTGACCATCATCTCGACGTCGACAACTCCGAACATCGACCCCGCCCTCGCTGGAGGGACTCCCACTAGCTCTCAGCCCTCACCACCGAGAAGAAGCCCCACTACCTCTTCTTCACCCTCTAGCCCACATCAGAGGAAGCAAGCTCCATGTCAAAGCCATTTGCAGGACCCAACGATCATATCAGAAGTGAAGGCGCATCATCAACATAGCCGCGCAGCTTCAGAACTACACGCACTGGAAAGCACCGCAAAAGTGCGTCACCGGCGCAGACCAGGTCCCTCGCTCTTCACGGTCGCTGCGCGTCTGCGCATGTGCAGAAAAAGCCCACTGATCCTTGCCACACGTGGATGCGCCGTCATTTTCTGTGGGATATCTGCGAGCTATACGtttctcaagAGCAGAGCTAGCCATAGTAATCCTATCAGTGTCTTCATCATCAACTTTGAGGGGATGCCCCCTGATGATTGTTCTGGTACGTCTCATATTGAATGCATCCTTTACAATGTGTCAACTTTGAATTGCACCTGGTGTCCACTGTCCTTGGAGACAAACGAAACTTTGATTTTCAGgCAAAATGAGCAGGAGCAACAATGTCCAGTCAACATTAAGGACAAGCTAAGTGGAAGAAATGTGTGCCATTTCCCACACATTACAATTGACAGAGactttacatttacagtttctATCAGTGTGTCCAACAAGTCATCTCTGACAACATTTGATCCACTTCTTATTGaaaaattAAATCCACCCTCAGATTTCAAATTGTTACTTGAAAAGAATCTTCTTATGCTGTCTTGGAAGCCACCACTTACAAAGGACCCAATAGCAGGATATTGCTTTCAATACCAATTATGTATAGAGAACTTGGATTCCCAATGGAAGATCATTGTAAATAGAACAGTAAATACCTACAATTCATCTATTGATGTATCTAAACGATATGCACTGACAGCGAGAGTAAAAGGACAACCATACTGTGGCTTTGGTGATATATGGAGTAGATGGACAAAGAAAATATGTGTAGGTTCTGTTATGACAAATAACTCTGAAGTTCTTCTTCACAGCTTGCTGATATTACCTTTTCTTGTCACTCTGATTTTGCTGATTTGCTGCAAGAGGTACAAAGTGATTGATAAAATACTCCCTGCAGTCCCACATCCACAAGAAAAGGTTGTGGATTGGTTTCTAACTTTTGACAAAGTTTACGAGGACAAGCACAAAAGCACCCCCCATGCCTCGGAAGACATTGGACAGGGCCCCTTTGAAGAATGCTTTCCCACCTTCGTCTTTTGCGATCTTCTTCCAGCAGTCAATTGTTCCGCTGTACATGATATCCGCTGTGAAAATAAGTTTTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89953 lncRNA downstream 47484 26932268 ~ 26932637 (-) True G71961
TU89858 lncRNA downstream 645121 26334655 ~ 26335000 (-) True G71882
TU89856 lncRNA downstream 655867 26324038 ~ 26324254 (-) True G71880
TU89855 lncRNA downstream 698156 26281374 ~ 26281965 (-) True G71879
TU89852 lncRNA downstream 711714 26267867 ~ 26268407 (-) True G71876
TU90016 lncRNA upstream 251401 27285420 ~ 27304597 (-) True AMCG00014693
TU90042 lncRNA upstream 301676 27335695 ~ 27342750 (-) False AMCG00014692
TU90058 lncRNA upstream 384797 27418816 ~ 27419045 (-) True G72049
TU90102 lncRNA upstream 496277 27530296 ~ 27530643 (-) True G72089
TU90167 lncRNA upstream 802320 27836339 ~ 27837927 (-) True G72139
AMCG00014686 mRNA downstream 75934 26902221 ~ 26904187 (-) True AMCG00014686
AMCG00014679 mRNA downstream 281496 26681180 ~ 26698625 (-) True AMCG00014679
AMCG00014678 mRNA downstream 334189 26643240 ~ 26645932 (-) True AMCG00014678
AMCG00014672 mRNA downstream 440559 26522096 ~ 26539562 (-) True AMCG00014672
AMCG00014674 mRNA downstream 499843 26428681 ~ 26480278 (-) True AMCG00014674
AMCG00014689 mRNA upstream 145084 27179103 ~ 27189518 (-) True AMCG00014689
AMCG00014693 mRNA upstream 264432 27298451 ~ 27304500 (-) False AMCG00014693
AMCG00014692 mRNA upstream 303679 27337698 ~ 27369527 (-) True AMCG00014692
AMCG00014700 mRNA upstream 339053 27373072 ~ 27377772 (-) True AMCG00014700
AMCG00014699 mRNA upstream 347167 27381186 ~ 27386627 (-) True AMCG00014699
TU87063 other downstream 15317628 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 16181974 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 17662954 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 18595897 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 18821531 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 1295720 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 2355271 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 5229148 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 5563443 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 5563443 32597462 ~ 32619149 (-) False G73127

Expression Profile