RNA id: AMCG00014695


Basic Information

Item Value
RNA id AMCG00014695
length 795
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00014695
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27420051 ~ 27421669 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTACAGCGAGACGAGGACAAGTTCCTGAAAGTGGACCACAACCTGATCAGCTGCCCGCTGGTGCAGGCCAGCTGGGCCGCCAAGAAGCTGGTGTGGGTGGCATCACAACACAATGGGTTCGAGGCGGGGAGAGTGCTGGAGGAGCGGGGCGAGGAGGCCGTGGTGGTGTTGGTGGCGAGCGGCAGGAAGGTGTGCGTCAACAAGGACAGCATCCAGAAGATGAACCCGCCCAAGTTCACCAAGGTGGAAGACATGGCCGAGCTGCCCTGTCTGAACGAGGCCTCTGTCCTGCACAACCTGAAGGAGCGCTACAACTCTGGCCTCATCTATacgTACTCTGGACTGTTCTGTGTGGTGATCAACCCCTATAAGACCCTGCCGATCTATTCTGCGGACATGGTGGAGATGTATAAGGGCAAGAAGAGACACGATGTGCCCCCCCACATCTATGCCATCACCGACACGGCCTACTGCAGCATGGTGCAGGatcGCAAGAACCAGTCCATCCTGTGCACAGGGGAGTCTGGCGCGGGGAAGACAGAGAACACCAAGAAAGTGATACAGTACCTGACTCACATCGCCTCCTCTCCCAAGACCAAGAAAGACCAAGGGGAGCTGGAGAGGCAGCTGCTGCAGGCCAACCCCATCCTGGAGGCGTTCGGCAATGCCAAGACTGGGAAGAACGACAACTCTTCCCGCTTCGGGAAGTTCATCAGGATCAACTTTGATGTGAACGGCTACATCGTGGGAGCCAACATCGAGACCTGTATCCTTTCTGTCACAGCACAGTAA

Function

GO:

id name namespace
GO:0032836 glomerular basement membrane development biological_process
GO:0072104 glomerular capillary formation biological_process
GO:0072015 glomerular visceral epithelial cell development biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90058 lncRNA downstream 1006 27418816 ~ 27419045 (-) True G72049
TU90042 lncRNA downstream 77301 27335695 ~ 27342750 (-) False AMCG00014692
TU90016 lncRNA downstream 115454 27285420 ~ 27304597 (-) True AMCG00014693
TU89953 lncRNA downstream 487414 26932268 ~ 26932637 (-) True G71961
TU89858 lncRNA downstream 1085051 26334655 ~ 26335000 (-) True G71882
TU90102 lncRNA upstream 108627 27530296 ~ 27530643 (-) True G72089
TU90167 lncRNA upstream 414670 27836339 ~ 27837927 (-) True G72139
TU90174 lncRNA upstream 435070 27856739 ~ 27861375 (-) True G72146
TU90346 lncRNA upstream 1156740 28578409 ~ 28578734 (-) True G72280
TU90377 lncRNA upstream 1224826 28646495 ~ 28646811 (-) True G72305
AMCG00014698 mRNA downstream 15132 27397227 ~ 27404919 (-) True AMCG00014698
AMCG00014699 mRNA downstream 33424 27381186 ~ 27386627 (-) True AMCG00014699
AMCG00014700 mRNA downstream 42279 27373072 ~ 27377772 (-) True AMCG00014700
AMCG00014692 mRNA downstream 50524 27337698 ~ 27369527 (-) True AMCG00014692
AMCG00014693 mRNA downstream 115551 27298451 ~ 27304500 (-) False AMCG00014693
AMCG00014694 mRNA upstream 9582 27431251 ~ 27440929 (-) True AMCG00014694
AMCG00014696 mRNA upstream 19684 27441353 ~ 27466854 (-) True AMCG00014696
AMCG00014697 mRNA upstream 48620 27470289 ~ 27482680 (-) True AMCG00014697
AMCG00014702 mRNA upstream 70359 27492028 ~ 27509142 (-) True AMCG00014702
AMCG00014707 mRNA upstream 296297 27717966 ~ 27762413 (-) True AMCG00014707
TU87063 other downstream 15757558 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 16621904 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 18102884 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 19035827 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 19261461 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 908070 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 1967621 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 4841498 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 5175793 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 5175793 32597462 ~ 32619149 (-) False G73127

Expression Profile