RNA id: AMCG00014701


Basic Information

Item Value
RNA id AMCG00014701
length 3383
RNA type mRNA
GC content 0.44
exon number 8
gene id AMCG00014701
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27483088 ~ 27491264 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAGCTACAGTAAGGAAtcgGCATGTGAATCGTTGCTGCCTGGCTGGAtagagatgaaaaacaaaaacgagtGCGTCAGTGCATTTGGTTTCATACTTGTACCTTCTGCTGACGTATAGACGATTATATGGGCTGTACTAAACAAGACACTACGCCATGGTCCGGCCGTGGTGCCCGCGCACCTGGCTGTGCTCCCGATCGTCTGTCTACACCCTGCTGCTGGGCACTGGTTTCGTTACCCTGGGCACCAGTCGCATTCTCCTACTGAAATTTTCTGCCAACGCAGAAAATAAGTATGACTACCTGCCTGCCTCTGTCAACCTGTGCGCAGAGGCCATCAAACTGGTGTTGTGTCTGGCGATGTCTGTGCGTGTCATGATCCACGAGGGACGTTCGTACAGAGAGTGGGGCTGTTCTTCCTGCAGGGACTTCCTGAATTACATGAAGTGGTCTGTTCCAGCCTTACTCTACTTCCTGGACAACCTCATCATCTTCTATGTGTTGTCCTATCTCCAGCCTGCTATGGCTGTATTATTTTCCAACTTTGTCATTCTGACTACAGCTATCTTATTCAGAATCGTCCTAAAGAGGCGCCTCTCTTGGGTGCAGTGGGCATCTTTGGTGATCCTCTTCCTATCCATTGTTGGCCTGACGAGGGGGACTGGGGGAAGCCAGCATGCCATTGCCGTTCACGGGCTTCACCCCGGACCCCTTTCCTCACCTTCCAACAGCTGCCTGCACTACTCCCAGCTGGAGGCTTTGCGGCTGAATGGGACCAACTCCAGTGCCTTGGAGGACCCCTTCCCAAGCATcccctggagtggggaggtgaTCAGAAAGCTAAACAGCTTTGGCCTGGGGTATGTTCTCATCCTCCTGCAGTGCTTCGTGTCGTCCATGGCCAACATCTACAACGAGAAGATCCTGAAAGAAGGCGACCAGCTGACGGAGAGCATCTTCGTGCAGAACAGCAAGCTCTACTTCTTCGGGGTGGCTTTCAATGGTCTGACACTGGGCCTCCGTGAGGAGTATCGCTCCCTCACCCTGTACTGCGGCCTCTTCTACGGCCACAATGCCTACTCTGTGGCCCTCATCTTCGTCACGGCCGCCCTGGGGCTCTCAGTGGCCTTCATCCTCAAGTTCAGGGACAACATGTTCCATGTCCTTACAGCCCAGATTACCACCGTTCTCATCACAGCCTTCTCGCTCTTCGAGCTAAACTTCCGGCCTTCTCTGGATTTCTTCCTGCAGGCCCCTGTGGTCCTGCTGGCCATCTTTATCTACAACGCAAGCAAGACCCGTGACCCCGAGTACACCCTGCAGCAGGAGAAGCTCCGGGTCATCAACGGGGAGATCTTTGAGAGGTCCAGAGGGGATGGTGAAGAACTGGAGAGGCTGACCAAGCCGAACACAGACAGCGAATCCGAAGAAGAGTCTTTCTGAGCGGTAGACCGGAAGGCACAGAAGGCTGTTGGCTGGGAAAGCCAGGTCTCTTGTCTTGGTGTTGCTCTGTGAAGGCTGAGAGAGCATGTAAAACACAGCTGCAATAACTTCTGAATATCTGTGTTAAGAAATGTGTGTAGCAAACCAGTGTTTTGATATAATGGAACTCCTGCATCCCACACAGCCCATATGAATGAGAATTGAATCTATATGAGAATCTATATAGAGCAGTTCTGGAGTGAAGAAGACTATTTCCAGGATGAGGTGTTGTAGAGTGAAGGTCTGAAGGACTCTTTTTCGTTTCTAATTCAGCACCAGTAAATGCACAAAAGGTTTGGTGCTGCTGGACCAGGTTTGAGAATGCTTTAGAAAAAGCACATTTGATACTTTGTGGTTTCTGCCTATGGGAATCTGCCCAAGCCTTACcctttgtttcagtgtttcccttttttgttgtgtttttaagtaaTTAACTACCAGTGCATTAATTAAGCATATAAAGTAcaatctgtactgtactgtccaCAAAAACTAAAAGATGCTAGTACTTGGATATTATTTCATCTCCCCCTTAAAGGTGAGGAAATATTATTGAAGCCTTGAAATTAGTTTTGCTTAAAATCTCATGAAGAATGGTGCCATGATTCACTTTTGTCTCGTATCAAATTACTTaatgagtatttaaaataatgtattttttaatttgccaaAATTACATTACCAGTAGCCATTGAAGGTAGATTTTACCAACTGTGCCCATTTTTAAGATACTCGATCAAGAACTGTTGGAATGTTATCAACCATTTGTTTAAGATCACCTTATATTCCTTacgtgtacatttttaatttgtgattgacaggagcatacatttattgaaaagGAATGTCTCCAGCTGAGAATGAGCCAGCTGGTTTGGCCTTTTAGAAGTGATTGTATTTTGCTGGTAATTGCAGAATGCCAAGGTAAGAAGCATGGAGTCACATTCTGTGTCCACAATGTGTGATGGATCTTGGGTATTAGCAGCTCCTTACGGATGTATGTATTGATGCTCTTGACTGTGATTTTAAGCACATTCCTTTCTAATTACTATGGAAGGCTATGAAAGACTCTTGGTATACTTTGCAATGTTAATCTGCCTTTTGTTGAGAGGTTGTTGTGTGAGAGGTAGTGAATGTTTCTGATTATTAAGGCAGTGAAGACCAGCAGAACTCTGGGTTCAGGTCATGGTTTGCCACCAGAGATGTCTGCTTAGCATTCAATTGTTgctgttcatgtatttattgttgtctgggatatttattcattcaatggtgtaaaaataaaggttatttAATAATCATGTAACTATACAAGTCTTGCACAGCTAATTATTATACAGGTATGTAATGcagtaaatgtataataatatacataatattgtaaatgcatacaaaattgTGGGATCCAACCCTGGTCCATTCAGGGTTTTATAGGCATCTTCAATCAATTGATGAAGATCAAGTGTGTCCTGACAAAGTAGGCCtacaattgtttcaatatagtaattgagagctgggttTGAATGGAAACCAGTTGTGTTTAGTTCACAGGGTTTGTAGACCCCTTGTTTGCTTAAAACCAGAAGCCATAAAATTGATACatggattattttttctttctttctcccagGGAATCTCTCTCAAAATATTAGTAAATGGTTGTGTTAAAACAATCTGCATAGTTGGAATTTCAATATGATTGCAACTGAAAGAGGACAAGAGGAGTTTTATGAATCATGTTACAAAGTGATGCTTCAAGCCAAACTACACATCTGTTCATCCCATGAAGTTAAGTGAAgtaaaggaaaatgtgtttggGGTGATGTGTGATGCAGCGATTATGGTATTGCGGGCTTACCGAATGAACCGAATGtgaataaagatttattttcaaagataa

Function

GO:

id name namespace
GO:0034219 carbohydrate transmembrane transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005351 carbohydrate molecular_function

KEGG:

id description
K15274 SLC35A5; solute carrier family 35 (probable UDP-sugar transporter), member A5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90084 lncRNA upstream 3644 27475064 ~ 27479444 (+) True G72072
TU89992 lncRNA upstream 455816 27026775 ~ 27027272 (+) True G71995
TU89956 lncRNA upstream 529835 26952296 ~ 26953253 (+) True G71963
TU89946 lncRNA upstream 571851 26904877 ~ 26911237 (+) True AMCG00014687
TU89834 lncRNA upstream 1251523 26231219 ~ 26231565 (+) True G71859
TU90207 lncRNA downstream 749302 28240566 ~ 28297484 (+) True G72169
TU90212 lncRNA downstream 806405 28297669 ~ 28300813 (+) True G72173
TU90255 lncRNA downstream 846027 28337291 ~ 28341717 (+) True G72208
TU90338 lncRNA downstream 1035524 28526788 ~ 28578733 (+) True G72273
TU90404 lncRNA downstream 1340492 28831756 ~ 28831975 (+) True G72329
AMCG00014691 mRNA upstream 145432 27321614 ~ 27337656 (+) True AMCG00014691
AMCG00014690 mRNA upstream 502788 26977435 ~ 26980300 (+) True AMCG00014690
AMCG00014683 mRNA upstream 508706 26966745 ~ 26974382 (+) True AMCG00014683
AMCG00014685 mRNA upstream 521211 26925834 ~ 26961877 (+) True AMCG00014685
AMCG00014687 mRNA upstream 573714 26908358 ~ 26909374 (+) False AMCG00014687
AMCG00014705 mRNA downstream 211820 27703084 ~ 27714268 (+) True AMCG00014705
AMCG00014704 mRNA downstream 344255 27835519 ~ 27841866 (+) False AMCG00014704
AMCG00014706 mRNA downstream 352126 27843390 ~ 27861363 (+) True AMCG00014706
AMCG00014703 mRNA downstream 377451 27868715 ~ 27879755 (+) False AMCG00014703
AMCG00014708 mRNA downstream 400587 27891851 ~ 27918923 (+) True AMCG00014708
TU89430 other upstream 4627442 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 9208728 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 10034635 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 11013975 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 11350286 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 344239 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 377439 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 811109 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 2360186 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 3273087 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile