RNA id: AMCG00014703


Basic Information

Item Value
RNA id AMCG00014703
length 2603
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00014703
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27868703 ~ 27879800 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagagagagagagagatagacataAAGGCATCTGATGTTTGAAGAACACTAGCTCAGTTCTGGGTATTGGTGCTGTAGTTGGATTGTCCCCTGTCGCAGTCAAGCAAGAGCTGGACGAGCCACAGAGGGCGAGATGGAGACACGTACCCTGCGGACTGCAAGCACATTCTGGGTCAACGCGCTGAGCTCTGGAGTTCAGTGGGGACTGCAGCTTAGTCCTCTGTAAcaggggctgtgtgtgttgggggtgctCTGGGCAGATTCACCAACAGGGGTGAGAATGAAAAACAGCGGCCCCCTTGGCATTCCTgggattgtatttttctgtatcgTATGCCCCCTGCTGGCCATGTTCCGAGGCGCGGAGGGAAAAACGGAAAACGGGAATCTGAGCGAAACTGACCCGACCAGATGCATGAGGCACCACTTTGTGGAAACCATCGGGCACCCTTTTTATAAGTGCAACTCTAAGATGGTGCTGCTGGCGCGCTGCGAGGGTCACTGCAGCCACACGTCACGCTCGGACCCTCTCATTTCCTTCAGCTCCATCCTCAAGCAGCCCTTCAAGAGTACCTGCTTCTGCTGCCGGCCTCACACCTCCAAACTGAAAGCAGTGCGTCTGCGTTGCTCGGGTGGGACACGCGTCACCGCCACGTACCGCTACATTCTGGCCTGCAACTGCGAGGAGTGCAGCTAATTCAGGGTCCAGCGCAAGAAGGCAATACGGCCAGCGGGAAGATTCCAGAAAAAGCAAACTTTTGTTGACTACCAGCATATTGTGGGTGTATGGTCCACTGTCAGTAGCttaattccattttaataaCAGTCTGTATACAGagaactttttttcttttatacgGATATCTCCCATTTGGATTTGTAATCGAGGAAGACATTATTTGGGTGGCAGTACATGAATGGACCGGACTTAAGCCAGCAGTGTTTACAAAgacttctttttaaaaacctgtTAAATGGTCTTCTGTTGCTGAACAAAATGCGAAAGCAGTGGGCTGAGAGACAAAGAAATGTATTCGCCTGTCAGCTTTTGAGCTCCATCCAACTAGGTATTATGTTATCGGTTCAAAAAATCTAACTGCAGTCAGCTTGTTGATAGCTGGCTTGAAATGGTCCAATTCTGATTGTTAAGGTACATTAACTTTGATAAGACTTGTTTTGGGGATTTGCAGTCGTTTGTACACAGCAAATCTTTTCAGTGTTATGATCCCATCTCTCTGCCGCAAgtggttgtaaaaaaaaaaggaaaaagaaacaacatcAATCTCAAAAACATTCTTGCCTTCTTCGTGAAGCATGAGTGCATCGTTTCGGCAATGCAGTCGAGCACGCCCTGTTATCTGTTGTCTCCTGTCATATTGTCCCTTTTCAATGGGAGTTAGTGCAATCGTTTAGCTGGTAGGTGACGTGATAAGGGACAACAGAATTGATCATATGACACTTGATAGAGGAACGTGACAGCGGAAGGTAGTGTCACGTTCTGGTGTAGGTTCAAATTATGTAACAAAGGACTACAAAGGCAGATGGGAAAACCTCAGCGTTTCATACGGAGATCTCCAGTAAAGGGTCATAATGGGGACTTTTCCAAATTAGGCTATAAGCACCCATGGATCAGGAGCAAACCATAGCTGAAAACAAATCGAATTGCTGAATTACCGAGCACagtatgaaaacatttgttgccctccaggaaaataaatatagtgtatatatgtttCCTGAAAATATACATGACCTGGAAAAATACAGCccttggttttttttttaaacagaaccTCTGATTCGAGCTGCTGATAGGTCTGTTAGACAGGCACTCTCGGTATGATTGCACGCAGGCTAGAGTTTCCCTGATTATTCCAAATCCTCAGGGCTTGGGATACATATTGGGGCAATGTAAACCTCATGTTCGGGAGTAGGATCAGCAGTTTTCCAGATGTGGTTAATGACATATGTATGGGGTATGGGAGGGAGCGATCTTTATGATCATTAGTGGAACAGGAGGAGGTCATGTAATTACATTGTGCTGAATGCATGCCTTGTCAATCTTGTCCCTGTGCTGTGCCATTTCAGTTTGGCCTCTCTTGGACTGGGGTCTTGTCCtccttgtttcttttctgaaaaTACCCCCCCAGTCCAGAATGTGATGCTTCGAATAGCATTCCATTCAACATACTATACTCACAAAACATCCTGGAGCCCCAAGAAGGTTGATAAATCCATCCATTATCCATCATGTGATCGGAGCAGTAAAGTAACTGACTGTATAGAAAAGACAAAGACACTGTGGCCTTTCCAGAGTCTGATGCCAGCGATTAACACTCTTCTTTGGGTGCATAAATCAAATGGGGTGATTAGGACTGAGGAGTTTATTTctattgtacattttctaagATGGACGAATCCTTGCACCACACCATATTCCATATCCTTTTCCTATCCTGAGCTCCCCCTGCCCCACATTTCCCCTCTTTTCTGTTACCTGTATCCTACTGGGCCAGGCTGGCTGTGCTCCTTGGTAACTAccaatcacatttgtttttctgtatctaTGAAGTCGTTCACTGATGAATGATCTGCAAGGTGA

Function

GO:

id name namespace
GO:0016055 Wnt signaling pathway biological_process
GO:0005615 extracellular space cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90084 lncRNA upstream 389271 27475064 ~ 27479444 (+) True G72072
TU89992 lncRNA upstream 841443 27026775 ~ 27027272 (+) True G71995
TU89956 lncRNA upstream 915462 26952296 ~ 26953253 (+) True G71963
TU89946 lncRNA upstream 957478 26904877 ~ 26911237 (+) True AMCG00014687
TU89834 lncRNA upstream 1637150 26231219 ~ 26231565 (+) True G71859
TU90207 lncRNA downstream 360811 28240566 ~ 28297484 (+) True G72169
TU90212 lncRNA downstream 417914 28297669 ~ 28300813 (+) True G72173
TU90255 lncRNA downstream 457536 28337291 ~ 28341717 (+) True G72208
TU90338 lncRNA downstream 647033 28526788 ~ 28578733 (+) True G72273
TU90404 lncRNA downstream 952001 28831756 ~ 28831975 (+) True G72329
AMCG00014706 mRNA upstream 7352 27843390 ~ 27861363 (+) True AMCG00014706
AMCG00014704 mRNA upstream 26849 27835519 ~ 27841866 (+) False AMCG00014704
AMCG00014705 mRNA upstream 154447 27703084 ~ 27714268 (+) True AMCG00014705
AMCG00014701 mRNA upstream 377451 27483088 ~ 27491264 (+) True AMCG00014701
AMCG00014691 mRNA upstream 531059 27321614 ~ 27337656 (+) True AMCG00014691
AMCG00014708 mRNA downstream 12096 27891851 ~ 27918923 (+) True AMCG00014708
AMCG00014711 mRNA downstream 287278 28167033 ~ 28184530 (+) True AMCG00014711
AMCG00014709 mRNA downstream 342906 28222661 ~ 28235915 (+) True AMCG00014709
AMCG00014710 mRNA downstream 371171 28250926 ~ 28280724 (+) True AMCG00014710
AMCG00014714 mRNA downstream 450042 28329797 ~ 28332468 (+) True AMCG00014714
TU90165 other upstream 26844 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 5013069 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 9594355 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 10420262 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 11399602 16465681 ~ 16469113 (+) False AMCG00014525
TU90214 other downstream 422618 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 1971695 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 2884596 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 3098461 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 3099815 30979570 ~ 30980252 (+) True G72786

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU232121 True 525 lncRNA 0.45 1 CI01000048 561726 ~ 562250 (+)
rainbow trout (Oncorhynchus mykiss) TU98227 True 809 lncRNA 0.41 1 NC_048565.1 79262854 ~ 79263662 (+)
striped catfish (Pangasianodon hypophthalmus) TU98227 False 1432 TUCP 0.46 3 NC_047599.1 14827786 ~ 14837393 (-)
bowfin (Amia calva) TU98227 True 1510 TUCP 0.43 2 CM030129.1 18919911 ~ 18921444 (+)
mexican tetra (Astyanax mexicanus) TU232121 True 1605 TUCP 0.51 3 NC_035915.1 32758518 ~ 32772132 (-)