RNA id: TU90175


Basic Information

Item Value
RNA id TU90175
length 2660
RNA type TUCP
GC content 0.45
exon number 3
gene id AMCG00014703
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27868703 ~ 27879800 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagagagagagagagagagagagagagatagacataAAGGCATCTGATGTTTGAAGAACACTAGCTCAGTTCTGGGTATTGGTGCTGTAGTTGGATTGTCCCCTGTCGCAGTCAAGCAAGAGCTGGACGAGCCACAGAGGGCGAGATGGAGACACGTACCCTGCGGACTGCAAGCACATTCTGGGTCAACGCGCTGAGCTCTGGAGTTCAGTGGGGACTGCAGCTTAGTCCTCTGTAAcaggggctgtgtgtgttgggggtgctCTGGGCAGATTCACCAACAGGGGTGAGAATGAAAAACAGCGGCCCCCTTGGCATTCCTgggattgtatttttctgtatcgTATGCCCCCTGCTGGCCATGTTCCGAGGCGCGGAGGGAAAAACGGAAAACGGGAATCTGAGCGAAACTGACCCGACCAGATGCATGAGGCACCACTTTGTGGAAACCATCGGGCACCCTTTTTATAAGTGCAACTCTAAGATGGTGCTGCTGGCGCGCTGCGAGGGTCACTGCAGCCACACGTCACGCTCGGACCCTCTCATTTCCTTCAGCTCCATCCTCAAGCAGCCCTTCAAGAGTACCTGCTTCTGCTGCCGGCCTCACACCTCCAAACTGAAAGCAGTGCGTCTGCGTTGCTCGGGTGGGACACGCGTCACCGCCACGTACCGCTACATTCTGGCCTGCAACTGCGAGGAGTGCAGCTAATTCAGGGTCCAGCGCAAGAAGGCAATACGGCCAGCGGGAAGATTCCAGAAAAAGCAAACTTTTGTTGACTACCAGCATATTGTGGGTGTATGGTCCACTGTCAGTAGCttaattccattttaataaCAGTCTGTATACAGagaactttttttcttttatacgGATATCTCCCATTTGGATTTGTAATCGAGGAAGACATTATTTGGGTGGCAGTACATGAATGGACCGGACTTAAGCCAGCAGTGTTTACAAAgacttctttttaaaaacctgtTAAATGGTCTTCTGTTGCTGAACAAAATGCGAAAGCAGTGGGCTGAGAGACAAAGAAATGTATTCGCCTGTCAGCTTTTGAGCTCCATCCAACTAGGTATTATGTTATCGGTTCAAAAAATCTAACTGCAGTCAGCTTGTTGATAGCTGGCTTGAAATGGTCCAATTCTGATTGTTAAGGTACATTAACTTTGATAAGACTTGTTTTGGGGATTTGCAGTCGTTTGTACACAGCAAATCTTTTCAGTGTTATGATCCCATCTCTCTGCCGCAAgtggttgtaaaaaaaaaaggaaaaagaaacaacatcAATCTCAAAAACATTCTTGCCTTCTTCGTGAAGCATGAGTGCATCGTTTCGGCAATGCAGTCGAGCACGCCCTGTTATCTGTTGTCTCCTGTCATATTGTCCCTTTTCAATGGGAGTTAGTGCAATCGTTTAGCTGGTAGGTGACGTGATAAGGGACAACAGAATTGATCATATGACACTTGATAGAGGAACGTGACAGCGGAAGGTAGTGTCACGTTCTGGTGTAGGTTCAAATTATGTAACAAAGGACTACAAAGGCAGATGGGAAAACCTCAGCGTTTCATACGGAGATCTCCAGTAAAGGGTCATAATGGGGACTTTTCCAAATTAGGCTATAAGCACCCATGGATCAGGAGCAAACCATAGCTGAAAACAAATCGAATTGCTGAATTACCGAGCACagtatgaaaacatttgttgccctccaggaaaataaatatagtgtatatatgtttCCTGAAAATATACATGACCTGGAAAAATACAGCccttggttttttttttaaacagaaccTCTGATTCGAGCTGCTGATAGGTCTGTTAGACAGGCACTCTCGGTATGATTGCACGCAGGCTAGAGTTTCCCTGATTATTCCAAATCCTCAGGGCTTGGGATACATATTGGGGCAATGTAAACCTCATGTTCGGGAGTAGGATCAGCAGTTTTCCAGATGTGGTTAATGACATATGTATGGGGTATGGGAGGGAGCGATCTTTATGATCATTAGTGGAACAGGAGGAGGTCATGTAATTACATTGTGCTGAATGCATGCCTTGTCAATCTTGTCCCTGTGCTGTGCCATTTCAGTTTGGCCTCTCTTGGACTGGGGTCTTGTCCtccttgtttcttttctgaaaaTACCCCCCCAGTCCAGAATGTGATGCTTCGAATAGCATTCCATTCAACATACTATACTCACAAAACATCCTGGAGCCCCAAGAAGGTTGATAAATCCATCCATTATCCATCATGTGATCGGAGCAGTAAAGTAACTGACTGTATAGAAAAGACAAAGACACTGTGGCCTTTCCAGAGTCTGATGCCAGCGATTAACACTCTTCTTTGGGTGCATAAATCAAATGGGGTGATTAGGACTGAGGAGTTTATTTctattgtacattttctaagATGGACGAATCCTTGCACCACACCATATTCCATATCCTTTTCCTATCCTGAGCTCCCCCTGCCCCACATTTCCCCTCTTTTCTGTTACCTGTATCCTACTGGGCCAGGCTGGCTGTGCTCCTTGGTAACTAccaatcacatttgtttttctgtatctaTGAAGTCGTTCACTGATGAATGATCTGCAAGGTGAAAAAGTATCTTCTCATAATCattcaataaaatatgattaaaggAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90084 lncRNA upstream 389259 27475064 ~ 27479444 (+) True G72072
TU89992 lncRNA upstream 841431 27026775 ~ 27027272 (+) True G71995
TU89956 lncRNA upstream 915450 26952296 ~ 26953253 (+) True G71963
TU89946 lncRNA upstream 957466 26904877 ~ 26911237 (+) True AMCG00014687
TU89834 lncRNA upstream 1637138 26231219 ~ 26231565 (+) True G71859
TU90207 lncRNA downstream 360766 28240566 ~ 28297484 (+) True G72169
TU90212 lncRNA downstream 417869 28297669 ~ 28300813 (+) True G72173
TU90255 lncRNA downstream 457491 28337291 ~ 28341717 (+) True G72208
TU90338 lncRNA downstream 646988 28526788 ~ 28578733 (+) True G72273
TU90404 lncRNA downstream 951956 28831756 ~ 28831975 (+) True G72329
AMCG00014706 mRNA upstream 7340 27843390 ~ 27861363 (+) True AMCG00014706
AMCG00014704 mRNA upstream 26837 27835519 ~ 27841866 (+) False AMCG00014704
AMCG00014705 mRNA upstream 154435 27703084 ~ 27714268 (+) True AMCG00014705
AMCG00014701 mRNA upstream 377439 27483088 ~ 27491264 (+) True AMCG00014701
AMCG00014691 mRNA upstream 531047 27321614 ~ 27337656 (+) True AMCG00014691
AMCG00014708 mRNA downstream 12051 27891851 ~ 27918923 (+) True AMCG00014708
AMCG00014711 mRNA downstream 287233 28167033 ~ 28184530 (+) True AMCG00014711
AMCG00014709 mRNA downstream 342861 28222661 ~ 28235915 (+) True AMCG00014709
AMCG00014710 mRNA downstream 371126 28250926 ~ 28280724 (+) True AMCG00014710
AMCG00014714 mRNA downstream 449997 28329797 ~ 28332468 (+) True AMCG00014714
TU90165 other upstream 26832 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 5013057 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 9594343 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 10420250 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 11399590 16465681 ~ 16469113 (+) False AMCG00014525
TU90214 other downstream 422573 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 1971650 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 2884551 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 3098416 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 3099770 30979570 ~ 30980252 (+) True G72786

Expression Profile