RNA id: AMCG00014705


Basic Information

Item Value
RNA id AMCG00014705
length 2529
RNA type mRNA
GC content 0.50
exon number 6
gene id AMCG00014705
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27703084 ~ 27714268 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAGCGGGCCAGGATATCCCACCTTTGTGCTGGCTCTTATCTCGCTGATGTAGTAGGGGTGGGGCGCACAATGTTGGTCACAGACATCTGCAGGGTAAGGAAGCGTTACCACAGTAACTAAGTTATCTGTATCCTCCATGTATTTCCTAGCAGCTGAAGCAGAGAAATCTGGGCTGTAGTGGACTTGGGGAGGGGTTTGTCGGTTTGCCATTTTGGTGTGGGTGAAGCGCACCACACCGGAGTTTTGCCACAGTGGAAGCCTGCGTGAAGTTTGGGCTCCTGTGTTTGGATGCTGCTCTGTGGAGGCTGTGTCAGCGGGGCCATGCATCTGACTGTGGTTTGCGAAGTGAAAAGACTCTGCGGTGCCATGTGGCTACTATGGGTCTTAGGGATGTTCAGCTGGAGCTCACTGGCTGCTACACCTTCTCACACGACTGCCCCCCCAGCCCAAAAACGGCAACAGTACAGCTTCGGGAGGAGCTTTCTGGGGCTGGATAAATGCAACGCTTGTATCGGCACGTCCAGCTGTAAGAAATTCTTTAAAGAAGAAATCAGGTTTGAGAGATGGCTGTCTCCAAGACTGCAGTTACCACCCACCTTTAAGAAGAGCTACCCGGGGAACTACACAGACGACTCTGAAAGCTGGAGGCCGGTGATCATCTCCCGCCTCCTCTCCCACCACAAACATGAAGTCTCGGACAAGAGGATCTGCAGCTCAGCCACCCAGCGTCACCCCTGTAGCATCGAGGGCGTGCTGAGGAAGACCGAGAGGTTCCAGAGCCTGGCACACTCCAGCCTGCTCACCCCTCCCATGGTCCAGGGCTTGTCCAGTCCACTGCTGCGCTGCCCTTCACAGCGGCTCCTGGACCGGATTGTGAGGCGCTATGCAGAGGTCACAGATGCCGGGAGTGTTCAGATGAAGCACTTTGCGGAGCGTGATAAACTCAGACTGCTCTACACCCTCTCTGTCAATCAGCAGCCCATCATGTTACAGATATTCCCAGGAGCAGAAGGGTGGCCCTTTCCAAAGTACTATGGCTCCTGTGGAAGACTGATGGTGTCCGCCAGCACAAAGCCCATAAAGGAATTCTACGGCTCTTCTTTGGAGACTAGGGCTGACATTGCTTTCCAGCTCCTGCAAATCACGCAGTCTCTGAGGACCAACAGCCTTCACTTCTTCCTCTACTACACCACCGTCAGTGGTAGCATGTTTGGCACTTTTGAGGACGGAAGACTGTTCGTCACAGATGCCAGCACCATAGGAGTCATTGATAAGCAGGAAGGCATTCCTGCAGACGACAAGCAAAAGCCGGACCTCACCGATGTCTTCTCGTGTTTGAGTTTGAGCTGCAGGAGGCCGCCTCCTTGTTGGACGGTCAGGGAGTCACAGAGTTTAAACCTTATATGCAGGGACATCCTCCCCCAGCTGTTGATGCCAGCCAGGGATGAGGCTGTAGAGAAAGCCATAGGCAGGCAGTTACAGGTTTGCGGAGATGGGATGCTTCCAGACAACCGCATCATAGACGCTGCCAATGCACTAATGAGCCTCCTCAAACCAATGCGGCCTTGCAACCAGCACTTTAACTACAGATACCCGGAGTGCAGATACAGCCAGGAATTCTGATTGGCTCCACTGCGAAAATCTTCTGCAACGTTATTCGTAACGTGTCGAGGTTCAATTCACAGCCTGCTGCGTGCACATCCAGACACAGAGGAGAAAGATCTCTACAGTTAGGACTGTCATTCGAATGAAGGCACCATTGGCACACAGCCTTCTGGCCAGCAGGAGTCTCCGTTATGTATCTCAGTAAGTGATTTGCTGGAATTGCCCTTGGCCATGAGGGAGACCGGTGTGAATCTGAGGCAGAAGTCCACAGTGCAACAACCTACAGggcataaaaataaagacaatacattgaaaaatgcacaaaaccaccacaggaaacaaacaaatccataaaGAGACCGGATTTTGCCCATTTGTCTATGTCTAATTGAGAATGCATTGTGCCATTTTGACATGGTGGGGTATGGGCAGTGTAGCATTCTTCAAATCCAATCTCAGAGGGTCCAGGGaatcttctgcttttcattccaccCGAGCTGCATATTTAGCTGAAGTGACTATTCAATTCTCTGAAAAAGCCCTTCAGGTGAAGCTCTTCCTCATGTCTGATGCAGGTGCTGAGTTCAAGAGACCCAGAAGACCTGTTGTAATGGTAGCTTCCAATATGAACCAGGGGTAGTTTTTTTTGGTCCGGTCACCGTTTCACTTTAAAATTAGCTCGTCTGGTCACTGCTTGAAAAGGGACataagcttttaaataaattggcATTTCTGAACTAACCCgtttaaaaaaaacgaaaaaaaaaaaccttgggGAATTTTTCTAGCAAAATCAGTCGGACAATGGCTGTGGTTGAGTTCCTATGACATTTGTAAGACTCATGGCACTGTATTTTTGGCATTAACAATTAATATGCCCTTTGATCCCTTCCAACAgggagattaaaataaataaaaactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90084 lncRNA upstream 223640 27475064 ~ 27479444 (+) True G72072
TU89992 lncRNA upstream 675812 27026775 ~ 27027272 (+) True G71995
TU89956 lncRNA upstream 749831 26952296 ~ 26953253 (+) True G71963
TU89946 lncRNA upstream 791847 26904877 ~ 26911237 (+) True AMCG00014687
TU89834 lncRNA upstream 1471519 26231219 ~ 26231565 (+) True G71859
TU90207 lncRNA downstream 526298 28240566 ~ 28297484 (+) True G72169
TU90212 lncRNA downstream 583401 28297669 ~ 28300813 (+) True G72173
TU90255 lncRNA downstream 623023 28337291 ~ 28341717 (+) True G72208
TU90338 lncRNA downstream 812520 28526788 ~ 28578733 (+) True G72273
TU90404 lncRNA downstream 1117488 28831756 ~ 28831975 (+) True G72329
AMCG00014701 mRNA upstream 211820 27483088 ~ 27491264 (+) True AMCG00014701
AMCG00014691 mRNA upstream 365428 27321614 ~ 27337656 (+) True AMCG00014691
AMCG00014690 mRNA upstream 722784 26977435 ~ 26980300 (+) True AMCG00014690
AMCG00014683 mRNA upstream 728702 26966745 ~ 26974382 (+) True AMCG00014683
AMCG00014685 mRNA upstream 741207 26925834 ~ 26961877 (+) True AMCG00014685
AMCG00014704 mRNA downstream 121251 27835519 ~ 27841866 (+) False AMCG00014704
AMCG00014706 mRNA downstream 129122 27843390 ~ 27861363 (+) True AMCG00014706
AMCG00014703 mRNA downstream 154447 27868715 ~ 27879755 (+) False AMCG00014703
AMCG00014708 mRNA downstream 177583 27891851 ~ 27918923 (+) True AMCG00014708
AMCG00014711 mRNA downstream 452765 28167033 ~ 28184530 (+) True AMCG00014711
TU89430 other upstream 4847438 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 9428724 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 10254631 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 11233971 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 11570282 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 121235 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 154435 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 588105 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 2137182 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 3050083 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile