RNA id: AMCG00014708


Basic Information

Item Value
RNA id AMCG00014708
length 3169
RNA type mRNA
GC content 0.42
exon number 14
gene id AMCG00014708
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27891851 ~ 27918923 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGAGCTGCTTGGCTGACTTCACCTGTGCAGAAGCTGCTATTCATGGGGGGAGCAATGCAATCTCAAGGGAATGCAATCTCTGTCTGACGGCTGCAAAGTTGCTCGTGGAGTCAAACCTGAACCCCCTGGTGCTGGAAGCGCGGGACCGAGTGGGAGGAAGGACCTTCACTGTGCAGGGAAAATCTCATCCATTCAAGGGGCCCTTCCCACCCATGTGGAACCCCATTGCCCTGATGGACTACAACAACCTGTGGAGGAAGATGGATGAAATGGGCCGAGAGATCCCACAGGAGGCGCCATGGAGAGCACCACACGctgaggagtgggacaaaatgaCCATGAAGGATCTCTTTGACAAGCTATGCTGGACACGGGTTTCCCGACAGTTCGCCAACCTTTTTGTGAACGTCAACGTCACCTCTGAGCCTCATGAAGTTTCGGCCCTGTGGTTCCTGTGGTACGTCAAGCAGTGCGGAGGGACCATGAGGATATTCTCCACCACCAACGGGGGGCAGGAGCGGAAGTTCTTGGGTGGCTCAGGGCAGATCAGCGACCGTCTGATGAATCTGCTGGGAGACCGGGTGAAACTAGAGAAGCCGGTATGCCACATCGACCAGAGCGGGGACGGCGTGGTGGTGGAGACCCTCGACCATGAGAAGTATGAGGCCAAATATGTCATCGTTGCCACAGCTCCAGCGCTGAATCTGAAGATCCACTTCAACCCTCCTCTGCCTCCGCTGAGGAACCAGCTCATCCATCGCGTGCCCACGGGCTCCGTCATCAAGTGCATGGTCTACTACAGGGAGAACTTCTGGAGGAAGAAGGGTTACTGTGGCAGTATGGTTATTGAAGAGGAAGAAGCCCCCATCGGCTTGACACTAGATGACACCAAACCCGATGGAAGTGTGCCTGCTATCATGGGGTTCATCCTTGCACGTAAGGCCAGGAGACTAGCAGGACTGACCAAAGAAGAAAGAGTGCTTGGCAGTGAAGAAGCTTTGTATCCTGTCCATTACGAGGAGAAAAACTGGTGCGAGGAGGAATACTCTGGCGGCTGCTACACGGCTTACTTCCCCCCCGGGATCCTCACTCAGTTCGGCAAGGTTTTAAGGGAGCCTGTGGGTAAGCTGTACTTTGCTGGCACAGAGACGGCCACCGAGTGGAGTGGGTACATGGAAGGAGCTGTGCAGGCTGGCGAGAGAGCCGCCAGGGAGATTCTCCATGCGATGGGGAAGATCTCAAAAAGTGAAATCTGGAAGCCGGAACCCAAGTCTGTGGATGTCCCGGCACTTCCCTTTAAGACAACATTTTGGGAAAGGAACATGCCCTCTGTCCCGGGTTTCCTGAAGTTCATTGGCCTGTCAACGGTCTTGACTGCTGCCACTGCTGCAGGTCTTATGGCCTGTAAGAGAGGCCTTCTTGTCAGGAGCTAAGCCACTATGGGAGTCTTAAAAAATTTACAAATGTCTTTATCATAGGCCTTTTCCAGGAATTATCCCCCCAACCCTGTATTCCCCAAATCTGTCTAATCAAGAGTCTAGGATAAGTTGCGAAAAAGGGAGGGAAATTCTCATTTTATGATTTCACaaagttgtttttgtcttaaatACGTGACACTAGAAGAAGGCCTAGATGGTTTGGTATTTTAAAGACTTTTAACCTGCAAAATCTGGTGCTGAGTCACTTTGTAAAGTTGTAATAGTTTATCGTTTACTTCACAATGATTATATGTGTTGAAACAGCTTTTTCTATATAgagtcctttaaaaaaaatgacatctaACGTGTTGAAGCTGTAGACAGTGACCGGCTCAactggttgtttgttttgctttcccaACAAggattttcacacacacaagaatgaacaaatcaaaagaCCACATTCCCTGACCTTCCTGTGAAATATTCAATGATTGTATAAATTCTGCATCATCCTCGgcatctttttaatgttttatccTAACGTTTGAAAtgtcattgaaaataaatatatctcgTATCACCACAAGACACAATGTTTAGGATTATAACAAAGGAATCATTCTTGTATGATACTGTGAAATCCTTAAGGGCACCCATGCTGCCTACTTGACATCCTTTCATTGACCATTGCTGGCTACTACAATAGTGGGCATTGATTTCAAAGGAAACATGTGTGTGGATCAGAATTCCAATGGGTTCTCTGAGCAGCAAGATTGCCATAGATATAAAGTCCATACTCACACAACTGAATCAGTAAaggttttttaatatatttaatctcAGAATGATGTATACGAGCACAAAGCAAAGCCTTTTATGTCACCTCTGCTTAGAATTTCAAAGGTAATTTTCTGTGCTACCTTGTTCTAGAGCCACcttgtataattaattaaaccacaatgaatgtatttatcagACACACAGCTTCTCTCATTCTTATTTCAGTGATGGATATAACCTTGGGCAAGattgtatttgaataattgaataagaATTATTAAAGTAGATATCATTAAGTTTTCTCATGAAACCAAAACGTAGAAGGGATGTGTTCTTCGTGAATATTTTTGCTCAGCCTAttgtaattattcttttttttttttctgatataaacaataaaaagactATCATTGCATGAAGAGTCAGATCTAATCTGACccttatttagattttatttattttttgtcattaggAGAAAAAAATTTGCTGAAAATGTTGTGTAAGATTAGCCCACACAATCCGACAATGTGATCTGAATTTGATTTAACAATCAAAGCTGATGCCGATAacctttattacatttttaaaggaatcaCTTCATTGATATCTTCAAAGCcgaaggaaaatatatatatttccggGGTATGAATTATGTTCAACTGtgtgaatattttattgtgaatattaattaatttgtatttaaaaatactgagtgtaaacctgcattttctttctaaatcaTGAGTCAACACTTTAACAAGGGTATGAATACATATggatttgtatatatgtgtgtgtatctatatatcatatacgcatgtttatgtttgttcataattttcttctttccaAAGAAAGAATGTATATTCATAgcctacacacactcacacacacacacacatatatctctatatatatctatatatctatatctatatctatatctatatctatatctata

Function

GO:

id name namespace
GO:0042402 cellular biogenic amine catabolic process biological_process
GO:0042135 neurotransmitter catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006584 catecholamine metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008131 primary amine oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90084 lncRNA upstream 412407 27475064 ~ 27479444 (+) True G72072
TU89992 lncRNA upstream 864579 27026775 ~ 27027272 (+) True G71995
TU89956 lncRNA upstream 938598 26952296 ~ 26953253 (+) True G71963
TU89946 lncRNA upstream 980614 26904877 ~ 26911237 (+) True AMCG00014687
TU89834 lncRNA upstream 1660286 26231219 ~ 26231565 (+) True G71859
TU90207 lncRNA downstream 321643 28240566 ~ 28297484 (+) True G72169
TU90212 lncRNA downstream 378746 28297669 ~ 28300813 (+) True G72173
TU90255 lncRNA downstream 418368 28337291 ~ 28341717 (+) True G72208
TU90338 lncRNA downstream 607865 28526788 ~ 28578733 (+) True G72273
TU90404 lncRNA downstream 912833 28831756 ~ 28831975 (+) True G72329
AMCG00014703 mRNA upstream 12096 27868715 ~ 27879755 (+) False AMCG00014703
AMCG00014706 mRNA upstream 30488 27843390 ~ 27861363 (+) True AMCG00014706
AMCG00014704 mRNA upstream 49985 27835519 ~ 27841866 (+) False AMCG00014704
AMCG00014705 mRNA upstream 177583 27703084 ~ 27714268 (+) True AMCG00014705
AMCG00014701 mRNA upstream 400587 27483088 ~ 27491264 (+) True AMCG00014701
AMCG00014711 mRNA downstream 248110 28167033 ~ 28184530 (+) True AMCG00014711
AMCG00014709 mRNA downstream 303738 28222661 ~ 28235915 (+) True AMCG00014709
AMCG00014710 mRNA downstream 332003 28250926 ~ 28280724 (+) True AMCG00014710
AMCG00014714 mRNA downstream 410874 28329797 ~ 28332468 (+) True AMCG00014714
AMCG00014721 mRNA downstream 488294 28407217 ~ 28441529 (+) True AMCG00014721
TU90175 other upstream 12051 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 49980 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 5036205 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 9617491 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 10443398 17403511 ~ 17448453 (+) False AMCG00014553
TU90214 other downstream 383450 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 1932527 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 2845428 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 3059293 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 3060647 30979570 ~ 30980252 (+) True G72786

Expression Profile