RNA id: AMCG00014720


Basic Information

Item Value
RNA id AMCG00014720
length 4756
RNA type mRNA
GC content 0.49
exon number 22
gene id AMCG00014720
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28456195 ~ 28483850 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTTCAGCAGAAGTCAagtctgtgtttatttccCGTCCTCCGTCTCTCAGCTGCTGTCCCCCACCCATCGGGATCATGTGAGCAGCCGGCTCTGTGACTCAGCCTCTCAGGCTGTTTGTGCGCAATCCTGAGGCCGCCGACTTCAGCTGCTGAGCGGCTACTGCTGGAGTGGATGTCGAAACAGTTTGATGTATTTAgggttttaaaaaacacatttgtgtcaCGTTTTCTGTCATGGCTTGTTTGACGCAGCACCGGTTTGAAAATGGCAAATACAAAAACTGGTTGAAGACCACCATGAGCCTGCAGTTACTGAGGAGCAGCCTCGAAGACTTCTTGGAAAACGAAACGGAAACCTTTCACTCCCGGCTGCGGAGTAAACTGGAGGAGCGGGTCTGTGAGAGCCGGCCGCCCTGCGACTCCAGAGGCTGCGGACCCCAGCGCACCAAGGCTCCCCAGATGTGTGCTGCTTGTACAGATTGGAAAAATGAAATCCTTTCAAACCACAGTAGTGGTAAGGGGATTATCTACTGGAATAACTGTAAGCCACATCTTTGGTCGTCACAGAAATGGGAAGTTGCAAAGGTTTACATGCCCAGAGGAAACAAGAATCACAATAACGTGAAGCAGTTTGATATCTCTGCAATCCTGAACTTCATGAAATTCTGCTCACACTTCAAGCCGATGgTCACCAATGTGAGAAACCAGATGATGCACTCTGTCGACATGAAGGTGCCGACCGAGGACATGCTGGAACATCAGAACAAGATCTTGGAGCTGATTCAGCAGCTGCAGGCCCACGTGCAGCTTCCTGAGCTGGCCATGGTGGAGAAGGAGATTAAGGAGCTGCAGGAAATGGAATTCAACATTGTCTTCGGGGAGTTGGAACTGAGCTCTGGTATTCGTTCAGAAGGCAATGTCTGTGGTCCAGAATTCCTTCATACTTTACTGAATGCACAGAAGGTCCAGGACCTGGAGCAGCAGGTCCTGAAAGAGAAGATTGAATTCCTGGCTTCTCGTCTTGAGGAAGATGGAGATCTGCTTGCAAGCCATGAGGAGTTGTGTGCGATGAAGGCCTTCTTGGATCAGAACAAGGACCTGCTGGAGCAGCTGAGACCTCAGGTGGCCAAACTGGACTTTATTGAGAAGAAGGTGGAGCAGCACGACCAGCAGCTGAGCATCCTGGCCGTCAAATTGGATAGCCTGGAGAAAAAGACAGACGAAACCCAATACAGTGCTGAAACAGTCCGGTTCAAGAACCATCTTTTAGAACTGGCACAGAAGAATAGGTGGCCCACTCCCATTTTTCACGAAATCCGGGAACCAAAAGGTTTCAAGGGCGTAGTAGTGGTGAATGGACAGAGGTTCACCGGGGTGCTAGTCCACTCAAAAACCAAGTCTGCTCATCAGGAGGTGGCCAGGCTGGCGCTCGAATCTCTCCCTCAGCAGCCCTGCCCCGAGGACCAATCATCGGGACCCACACCCATGGACCTTGTCCAATCAGAGACCACATCTTCCACCACAGCCCCGGTGTTCTTCAGCAGTGTGACTGTGGTTCTGAACACAGAGGTTACTCTCTCAGAGGAGGATTGTGGGCAAGGGAATGCGGTGGAGGCAATTTACAAGAAATTAGCTGTCATGTTCGGCCTGGAAGTCTCTGCTGCAGggGGATCCTTTAAGCAGAAAGTCCAGGAATATTTCACTCAGGCTGGTTTCACACAACCGGAAGAAATACTCCAGACAAGCCCTGATGGAAAGATTAACTGCAAGCTAAAAATCTTTGGACCTTTCACCTTTCAATGCCAAGATGCTGCTACCAAAAAGAAGTTGGCTGAGCAACAGGCAGCTAAAGTTGCCCTCACCCAGCTTGCAGGGGTCCTAGGCTGGGATTGTGCCACAGAGGACAACTACAAAGGTACACTACAAGAACTGCTGGAGAGGAATGGCATGGACAAGCCCTCTTATAATGGGCTACCCAAGGACTCGGGCACACCTGGAGACACAACTGCCATTGCTCCTGTACTGCCCAGTGCAGCATCCCCTCAGCGCTCACACATTGATTCTCTGCAGCAGAAGCTGAAGGAGGAGCCAGTGACCCAACCTGTGAGCCAGCCGCCCGCCATGTCCTCTGcaaGCAGGCTATTCTTTGTAAGAGCAACGGTGAGTCTGAAGAAAGTGTTCGATCCCTACGAGACCCACAGCAAGAAGGAGCAGGCAGTCAAGGGAGCGTACAAGAAGCTGTCAGTGGCCTTTGGTCTGGCAGACCCCACCTCAGctGCTTCTTGTACCAGTGCCAAGAAGGTAGTACATGAATTCTTCACTAAGGCTGATTGGCAGCTCCCTGAGGAAATGTGTGAAGGCCCTGTAGATGGCAGCTTTACTTGCAAGCTGGACATCTCTGGAGactttacatttcacaatcaaGAGGGTGCCTCCAAAAAGCAACAGGCAGAACAGGGAGCAGCTAAAGAAGCTCTGTGTAGGCTGGCAGGGGTCCTTGAGTGGGACCCTGTTTGTATGGATGGCAACTATAAGGGGAGGCTTCAGGAGCTGCTAATGAAACAGGGGCAGCAGATACCTGTGTACCAGCAAGTCTCTGAGCATTGCGCTGCCACCCCTGTACCAGGCTGCCAAGTGTCTCCTGCTCTCGCCGCAGCCTCAGAGAACAGCAGGGCGGGAGGAGATGTGAGTCAGCCAGAGTCAGCCCTGGATTATGTTCCCATTGCAACACAGATTGCCCAGCCCAGCGAACTGCCTCCTCACAACAAAATGCCCAGAATCGAGTCTCCAGAGCTTCAGAAGCTTCTTGAGGTGTTGGGTCTGCGTCCACCCCAGGTGAACAGTCATGTGAGTGTGGAGAAGATGTTTGAGTACACAGTGAGTGTCCCCCTAGCAGGCCTTCTAGTCACAGCACAGGAAGCCAGTGGCTCAAAGAAGGAAGCTATCCGCAAGTCCTACCTGAAGCTTGGCCAGGGCCTGGGTCTCTGCGAAGCAGAAGAAACCAAGGCTACAATGATTGTGAAAGAGCATTTGAAGCAGCTTTCGTACAGCCTCCCCACTGAAGAGTTCTCCGAGACCGCAGGGAAGATGTTTTTTTGCCATCTGGGCGTGGCCTGCTATACTCTGACGAGTGCTGGGAAAGGACCTTGTGAGGATTCGGCCAAACATGAGGCTTCCAAGAAAGCCCTGGCCCAGCTTGCCCACCTTTTCGACTGGGATCTGGTTGCCAAAGTGGCAGATGGGGATGACGCAGTGGGGAGGATCACTACGCTGTTGCAGGGGGCGCAGCAGAAGCAGCCCACGTTCCTTCCCACCTCCACCCTGCACAAAGCCTCCGCTGAGCTGCACTTCAACACCTTCTCCCTGGAGAGCAAGGGGAGGGCAAATGTATCCAAGAAGTCAACACGCAACGCCATCAGCGCACGCATGCTCGGACTGCTGGGAGAGAGGGCAGAGTTAGATACAAGCAACAGCTACAGGAACATGGTCCAGGAGTGGTTTGATCAGAGAGGGTTGGAGCGGCCCCGGTACGAAGACACGCAAGAACAATTTGGGGCAAAGGTCACATTCTCAGCCACCTTGGAATGCTCCCCCTCAGATTGGCAGCCCAGCTGGGAGGAAGCTGATAAGAGGCTGGCTGAGGAGGTGCAGGCTCGTCTCAAGTACCTGGTTGAAGAGGGGAATGAAAAGtctctgtaatatttttaatggaataGCACAGAAGGAAAACTGGGCTGGTGTTAAGCCTGTTGCCCATGAGtcgcaaaatgttttttatgataTGGCAACAGGGGTATTGTGCAATGTAATCATGAATACATAAAAGTGATTTTCAACAGCTATACTTAAATcttacaaaacaacaattgtTTGGTAAATGTGTACTCTTTTAATGGATCAGATGTGCTTTCTCTGTCCTTAGAcaaggggttcccaatgtctggtgatggtgggccaatttccagaggttgcatgggatgggcgcagtagaaaatgaaccactggagaaaatgaaatatgtcccaaatcatacctttttatttcctatacatttatgttagggaacatttatgaactttaactgttgttttattatttccccccaaattacatgtgcaatttgtaacaaaatgttcagaaactgtaacaatatagtaaaggttcagaagaGGAGTGGGTTGAAGGTTGACTTTGGAGGGCCGCAacaaacatccttgagggccacatttggcccccggacagcactttgggaacccctgccttAGACATTCAATGTAATATCAGgatactatttattttctgttttttcatcaGTCAGTGGTTTAAGTCATATATGAAGAGAACGCAAATGTactcataaaataaaacctaagtTATGAACTTCTCACTTTTATCAGTGAATGTGATGTTTTGTAGCTTTATTCATGTACATGTATGGTTAAGTCATACTGTACCAGCATTAAGTAAATATGTGTTGAATCTCTTCACAGTGTGAAACAGTTCATACAGAAGACTGTCATATTAATAACTGAACATCAGCCTATGGACTGCCAGTGAAGTTAAGCTAGTGGCCAGTACATTTTAAGGCATTCATTTAtctataaaatgaataaataaaatacactgaaatcaGATGAATAACTGCAGTAAATAAGATACTGTACAATAGTAATTGTAGTCTATAGACTTTGTTTCAAGCTGTAAAAACTGGATTTCCcaagaaaagtaaaacataacCATGAAATTGACAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90255 lncRNA upstream 114478 28337291 ~ 28341717 (+) True G72208
TU90212 lncRNA upstream 155382 28297669 ~ 28300813 (+) True G72173
TU90207 lncRNA upstream 158711 28240566 ~ 28297484 (+) True G72169
TU90084 lncRNA upstream 976751 27475064 ~ 27479444 (+) True G72072
TU89992 lncRNA upstream 1428923 27026775 ~ 27027272 (+) True G71995
TU90338 lncRNA downstream 42938 28526788 ~ 28578733 (+) True G72273
TU90404 lncRNA downstream 347906 28831756 ~ 28831975 (+) True G72329
TU90400 lncRNA downstream 352432 28836282 ~ 28837910 (+) False AMCG00014729
TU90416 lncRNA downstream 435126 28918976 ~ 28921290 (+) True G72341
TU90428 lncRNA downstream 497272 28981122 ~ 28985576 (+) True G72353
AMCG00014722 mRNA upstream 6088 28444976 ~ 28450107 (+) True AMCG00014722
AMCG00014721 mRNA upstream 14666 28407217 ~ 28441529 (+) True AMCG00014721
AMCG00014714 mRNA upstream 123727 28329797 ~ 28332468 (+) True AMCG00014714
AMCG00014710 mRNA upstream 175471 28250926 ~ 28280724 (+) True AMCG00014710
AMCG00014709 mRNA upstream 220280 28222661 ~ 28235915 (+) True AMCG00014709
AMCG00014724 mRNA downstream 99619 28583469 ~ 28590960 (+) True AMCG00014724
AMCG00014723 mRNA downstream 107228 28591078 ~ 28609187 (+) True AMCG00014723
AMCG00014726 mRNA downstream 211961 28695811 ~ 28766090 (+) True AMCG00014726
AMCG00014725 mRNA downstream 283585 28767435 ~ 28779290 (+) True AMCG00014725
AMCG00014729 mRNA downstream 313199 28797049 ~ 28837909 (+) True AMCG00014729
TU90214 other upstream 152122 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 576395 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 614324 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 5600549 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 10181835 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 1367600 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 2280501 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 2494366 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 2495720 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 2506213 30990063 ~ 30996363 (+) True G72787

Expression Profile