RNA id: AMCG00014722



Basic Information


Item Value
RNA id AMCG00014722
length 954
RNA type mRNA
GC content 0.51
exon number 6
gene id AMCG00014722
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28444976 ~ 28450107 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAATGGAAGAAGGAGATTCGAAGGCACCACACCAACAGAGCAGGGATCATTAACTGGGGCAACTGCAAGCCCTGGCTGTGGCCATGCCTACATGCCGCGTGGACAGATGGACGTTACCGGAGCCAGTCAGTGCGATGCTGCAGCGCTGCTTAATCTCATCAATTTCTGTGACCACTTCAGCAACGTAGATCAACGGCAAGTCCGACAGGTGATACAGAGGCGCAATGAGCTGATGCACTCGTGTGAGATGAGGGTGTCTGCCCAGTGGATGGAACAGTATGAGAGGGAACTACAGAGTCTGCTCCTGGCACTGAGACAGGTTCCAGGGGTGGCCACAGCCGCTCAAGAGATAAAGGAGATGCTGTCTGTGGATTGGTCGGTTCACGTCCCTGGAATGGACAGCACTGATGGGCCAGGGAGTGAGCAGCACATCAGCGAAGTGGAGACCGAGCTGCTGAGGGAATTGCTCCTTGACTTTGGAGGGGGAGAACCCCACACCGAGCAGAGCCTGGAGGACTTGCAGAGGCTGAGAGATTTTCTGAAGAGCCATCGGGATCTGGAGGAGAGATTTCATGCTGAACTCAAGACCATTGAGGGGTCAATTAATCAGGCTGTGCATGCTGATGGGGGCAGTAATGTTGTTACCGGTGTAATTACATCTTCAACAGTGAAAGGCATGAGTGTGAACATACAAAGCTCAACTTCCAGTGGGTTAAACAACAGGCAGCCTACACCATGTGAGTACTACATTGTTACGTGCCTTGTGTGCGTACATACTGGCGACTGGCgtgtgctctgtgttctgttgtCTTCCTATCCCTATTGTACACAGGTGTCCCACTGTGATTGGTTCTCGTCCCCGTCACTCAACTCCGCTGTTCCCTGCTGTTCCTGTCCAATCAGATGTCTCCAActacagtttttaaatataaatatactataCCTACAAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU90255 lncRNA upstream 103259 28337291 ~ 28341717 (+) True G72208
TU90212 lncRNA upstream 144163 28297669 ~ 28300813 (+) True G72173
TU90207 lncRNA upstream 147492 28240566 ~ 28297484 (+) True G72169
TU90084 lncRNA upstream 965532 27475064 ~ 27479444 (+) True G72072
TU89992 lncRNA upstream 1417704 27026775 ~ 27027272 (+) True G71995
TU90338 lncRNA downstream 76681 28526788 ~ 28578733 (+) True G72273
TU90404 lncRNA downstream 381649 28831756 ~ 28831975 (+) True G72329
TU90400 lncRNA downstream 386175 28836282 ~ 28837910 (+) False AMCG00014729
TU90416 lncRNA downstream 468869 28918976 ~ 28921290 (+) True G72341
TU90428 lncRNA downstream 531015 28981122 ~ 28985576 (+) True G72353
AMCG00014721 mRNA upstream 3447 28407217 ~ 28441529 (+) True AMCG00014721
AMCG00014714 mRNA upstream 112508 28329797 ~ 28332468 (+) True AMCG00014714
AMCG00014710 mRNA upstream 164252 28250926 ~ 28280724 (+) True AMCG00014710
AMCG00014709 mRNA upstream 209061 28222661 ~ 28235915 (+) True AMCG00014709
AMCG00014711 mRNA upstream 260446 28167033 ~ 28184530 (+) True AMCG00014711
AMCG00014720 mRNA downstream 6088 28456195 ~ 28483850 (+) True AMCG00014720
AMCG00014724 mRNA downstream 133362 28583469 ~ 28590960 (+) True AMCG00014724
AMCG00014723 mRNA downstream 140971 28591078 ~ 28609187 (+) True AMCG00014723
AMCG00014726 mRNA downstream 245704 28695811 ~ 28766090 (+) True AMCG00014726
AMCG00014725 mRNA downstream 317328 28767435 ~ 28779290 (+) True AMCG00014725
TU90214 other upstream 140903 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 565176 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 603105 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 5589330 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 10170616 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 1401343 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 2314244 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 2528109 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 2529463 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 2539956 30990063 ~ 30996363 (+) True G72787

Expression Profile