RNA id: TU90400


Basic Information

Item Value
RNA id TU90400
length 1629
lncRNA type sense_over
GC content 0.35
exon number 1
gene id AMCG00014729
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28797049 ~ 28837910 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTCTCCCCACTTTCCCTCGGAAAAGGAGAACTCGCACGCAGACCAGGAGCGCTATCCGTACGATTATTCAGACACGGACTCCAGTAGCTCTGACGAGAATTATTGCTATTACCACCGGCCATACTGCAGCACCTGTTTACAGAGGCCATACGATTCCACCGAGAGCACCAGCTCTGAAACCTCAGACAGTGAGTTTGCTGCACTTCCAAATCGCTGGCGTAGGCCGCACAGTAAGAATCACCCAGTGGTCAATTTTAAAGAAGACCTAAAACCCACATTTGTATGAAAAGCTTTCTAGTTTGGCAACGTCAGACGGTGAAAAATGGTTCCTGGATTTTGGCCTGAAGTGGCCTGAAGTTAACCACGTTAATCCATAAACCTCCTTTGTATTTTGTCACTTTGGCAATGAAAATGATgacatttcattatatttaccttctaattagtttaatttttttttactgctgccCCGATGAGATtagaattgttttgtgtttctcaggATTATGCTGTTAGGTTGATGCTCCAgtcctttaataaaatgttgaatgtttgcCTCTTTATCTGACACATCACAAACCCTTTCAATTATGTATAAGGTCTGAAGGGATTTACAATTTACATGGTCTGATCCTTTACTATTACATTATTCAGGAAGACGCACCTTAATGTGCATTTCAGTCTAGAAGGAGGAGCTCTGTCTGaatttatataataatctaCTATCTTCCATTAGAGCTGTTTATACCATCAGTtgttataaaattgtatattgaTGATTACATATCCctttatgtattgtttacttTGGTAAAAAGCTAAGAACGTATTGttcaaaaacatattcaaattcCCTATACCCTTTGATTCAATCCTACGTTTTAAGAATAAAACCATTCTTTTTTTACTATATagaaattatttttgtgaagtcACTAATTCAGTATGAGATTTTCATCTTCCCTGTGCAAATCATGCACTTTTCCACTGTGGTTTAGGAGCCAGCTAAATTAAGCTTGAAATGTTTATGACAGTTCTCCAGCTGGacagaagcaaataaaacatttattttagctaGTAGCAGCAATATGATACCAAACGCATCAACTCAGCCTCGAATAATCAATGTGGTATCTCCTTTAAGTATGAGTAAGCCACTTATTGACACCACTGTAATTTTAGAGATGtttccaaagaaacaaaacgATTAGCCTTTCCTTTTATCTGGTGTACTTCAGATAAGTGCTAAAATAGTTTTCCAATTAGAGGAACTGAAGAAGTTCTGTAAAGCGATTGACCATGAAGTGGTTTAACACAAACTTCAACAAAATGTCTCCCTCAATGGCAGCTTTATGTTCACCATAGATATTTCTTGTGTGTACCCAGCTGAAAACTACCATCATTTATAactggcatttttgttttttattcaatgtGGCACTAACTTCTTGTTAAGTTATGTATATTGtcattaatgtaaaaaaatgtttatttgtgcttAATTGAGAGGATTTAATTTATATCTAGCATTATCTTTTTCGTTTTTTGCCtacattgtttgatttgttgttgttgtttgttttctttgtgtcctataatatgttataatatgaattttgcattataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90404 lncRNA upstream 4307 28831756 ~ 28831975 (+) True G72329
TU90338 lncRNA upstream 257549 28526788 ~ 28578733 (+) True G72273
TU90255 lncRNA upstream 494565 28337291 ~ 28341717 (+) True G72208
TU90212 lncRNA upstream 535469 28297669 ~ 28300813 (+) True G72173
TU90207 lncRNA upstream 538798 28240566 ~ 28297484 (+) True G72169
TU90416 lncRNA downstream 81066 28918976 ~ 28921290 (+) True G72341
TU90428 lncRNA downstream 143212 28981122 ~ 28985576 (+) True G72353
TU90429 lncRNA downstream 151697 28989607 ~ 28991299 (+) True G72354
TU90496 lncRNA downstream 299219 29137129 ~ 29137353 (+) True G72409
TU90507 lncRNA downstream 319115 29157025 ~ 29160425 (+) True G72415
AMCG00014725 mRNA upstream 56992 28767435 ~ 28779290 (+) True AMCG00014725
AMCG00014726 mRNA upstream 70192 28695811 ~ 28766090 (+) True AMCG00014726
AMCG00014723 mRNA upstream 227095 28591078 ~ 28609187 (+) True AMCG00014723
AMCG00014724 mRNA upstream 245322 28583469 ~ 28590960 (+) True AMCG00014724
AMCG00014720 mRNA upstream 352432 28456195 ~ 28483850 (+) True AMCG00014720
AMCG00014727 mRNA downstream 44007 28881917 ~ 28890968 (+) True AMCG00014727
AMCG00014728 mRNA downstream 67991 28905901 ~ 28916634 (+) True AMCG00014728
AMCG00014734 mRNA downstream 258219 29096129 ~ 29110638 (+) True AMCG00014734
AMCG00014733 mRNA downstream 283041 29120951 ~ 29129042 (+) True AMCG00014733
AMCG00014739 mRNA downstream 409965 29247875 ~ 29256354 (+) False AMCG00014739
TU90214 other upstream 532209 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 956482 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 994411 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 5980636 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 10561922 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 1013540 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 1926441 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 2140306 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 2141660 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 2152153 30990063 ~ 30996363 (+) True G72787

Expression Profile