RNA id: AMCG00014731


Basic Information

Item Value
RNA id AMCG00014731
length 2204
RNA type mRNA
GC content 0.53
exon number 16
gene id AMCG00014731
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28995936 ~ 29013055 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGCGCTGGCGGGCAGCGGGATGATGCAGGGCTTGTGTAATTGAAACACAATCTACCGGTTCAGTGAAGGAGCGAGGCATTTCGTGGCGATTTACTGACAAACTGCTTTCTTCTCTCGGCGACAATGAGTGTGACCCAGACTCTCCTGCAGCAGGGCGCCGGGAGAGGGTACCGCCAACAGCGGGTACATGACTACCTGTACGACCCTGTGTATGCTGTCTCCAGCCAGAGAGACCATGCCCGGGCTAACTTCAGGGCCCACGCCTCCCTGGACCGGGTGAAAAGAGTCCCAGAGTATAAATCCATGTTTAGTTCCCTGCCTCATCACCCCCGATACACACTACGCCTGGAGGCTACTGACCCGGTGCCACCCTTTATTGATCGGCGATGGAGAGGCAGAGTAGAGCAGCGAAGGGAGCAACTAGGAAGATGTAATCCATCTGTAAAAGTCCAGGATGGGACACATGTTGATTGTGATATTTCAGGAGCTGATCGCTGGAAGTATTTTAAACGTCCGCTTATACCTTTTTCACAGCAGCTCCCACCTGATGTTGTTTTTGCAATTCCAAAggGAGATGCAACCTCTGAAGGTGCTGCTGTGAGACCTTCCACACCTTTTGCACGTAATGTCGCTGTGCAAACAGACTACAGGGACAGCGAGGCTCAGACTGACCCCTACACCCCTCAGTATGTAACTCGCCCTGGATCGGCCCCAGAGCTTCTAACACTGGCCACCCTAACATGGAGCCGGGGCCTACCAGCTGGCTTGGCAGAGGTGGAGATGATAGAGAGAGCGCGGGCAAAGCGAGCCTGGGAAGCCACCCTCCCGCCACTGGACGATCTTTCCCAGCTGGACAAAAGAAGGAGAATGATGGATGAAATGGAAAGGAAGGAGTGGGCGTTTCGAGAAGGAGAGATAGACAAGCTACAGGAGGCGAGGCTGCAGGTCCTCGTGAAGCTCCTGCAGCAACGCGAGGAGAAGCAGCAGCAGGCTAACGTACGGCGCTTGGACGACCGCTTCTCCCAGCTCCAGCGCACCAAGGGGGCCAAGGTGAAGAAGATGCGCAACGAATACATCAGAGATATCAGGAAGCTTATccagaaaagaaagaatgtaGAGGGAAAACTGGAGAGACGGGACATCATCAAAGAGTTTGCCGACTATGGATCACAAACCTATGCCCCGCTGTCTCGCGGGGGCCTTTCCACAGATCGAGATTCAGAACGTTACGTTGTGAAAAGCACTCTCCTCGATACTTATGAAGGCTTGCTCGAGCTGGAGGCATCTCTGCCAGATTTTGTCACTCAGCCACGCATAAAGGCTCCAAAATCCAAAACCAGCAAAGGGTTTGTGAAGCGGGCTGCCCGACAAGAGGTGGAACTGGCTCAGATACACCAGTCACTGAAAGAGGAGAAAAGGAAGAGTGAGGAGAAGAAGCCCTTGCGTTTTCTGTTCAAGATGGAGAAGCCAGTCCCTCGACCCCCCACTCCAGTTGTGGAAGACCCCCCTGAGggagaagaggagaaagaaCTGGCTGTCATTTACCTTCAGAAATTGTTAAGAGGAAGAGCCATTCAGAATATGATGTTTGAAGGCAAGGAGAAGCGACTGGAGCTCATTCAGGAGTTGCGTACCACCCACGCCCTGCAGAAGGAGGGGCAGCTACTGAAGAAAACCGAAAAACAGGTCACACTGGCTCTGCAGCGCCAAAGAGACTTGCAAAACCACCAGGTTTCCACAGCAGAAAGCTACCTGGCCAGTACTGCTGGAGGTGTCCTGGGAGACATGTTCAGCTACCTTTCCAAGGAGCTGGTCCGTCTGCAAGAGGAACGACGCCTTCACGCCTTCACCATCCTGGCGGAGAGAGACCGGCGAATCAGGGAGGCAGAGGAGAGCGGGCGGAGACAAGTGGAGGAGAGGCGTCGGCGGGAGGAGGACGAAATCTTCAAACAGGTTGTGCAGGTGCACCAGGATACTGTTGATTCATACCTGGAAGATATTATTCTGGCCACACTGGAGAAAACGGCAGATGAACAAGCCAGAGAAGAGATCCACAAGCTCGCTGAAGAGGTTAACAGCATTGCTTATGCCATGGAGGAAACCCGAACTCGGCTGCAGTCCGAAGAAATCGTTGCAGAGTTGGTCTATGGTTTCCTCATCCCAGAGGTTAAGAAACTCACAGTGAAGGACCGAGGTGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90446 lncRNA downstream 1586 28925630 ~ 28994350 (-) True G72370
TU90454 lncRNA downstream 4716 28989465 ~ 28991220 (-) True G72375
TU90409 lncRNA downstream 174860 28820820 ~ 28821076 (-) True G72334
TU90399 lncRNA downstream 216643 28776227 ~ 28779293 (-) True G72324
TU90398 lncRNA downstream 220199 28775281 ~ 28775737 (-) True G72323
TU90506 lncRNA upstream 133788 29146843 ~ 29147168 (-) True G72414
TU90515 lncRNA upstream 175635 29188690 ~ 29189044 (-) True G72423
TU90530 lncRNA upstream 204725 29217780 ~ 29218033 (-) True G72438
TU90574 lncRNA upstream 337023 29350078 ~ 29351654 (-) True G72472
TU90580 lncRNA upstream 382431 29395486 ~ 29398305 (-) False G72477
AMCG00014730 mRNA downstream 44584 28930365 ~ 28951352 (-) True AMCG00014730
AMCG00014718 mRNA downstream 500910 28494507 ~ 28495026 (-) True AMCG00014718
AMCG00014719 mRNA downstream 501450 28494106 ~ 28494486 (-) True AMCG00014719
AMCG00014717 mRNA downstream 505373 28487629 ~ 28490563 (-) True AMCG00014717
AMCG00014716 mRNA downstream 615883 28341151 ~ 28380053 (-) True AMCG00014716
AMCG00014732 mRNA upstream 10723 29023778 ~ 29031908 (-) True AMCG00014732
AMCG00014735 mRNA upstream 338693 29351748 ~ 29383448 (-) True AMCG00014735
AMCG00014742 mRNA upstream 440987 29454042 ~ 29463876 (-) True AMCG00014742
AMCG00014744 mRNA upstream 477010 29490065 ~ 29507061 (-) True AMCG00014744
AMCG00014748 mRNA upstream 602466 29615521 ~ 29643703 (-) True AMCG00014748
TU90285 other downstream 663454 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 17333443 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 18197789 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 19678769 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 20611712 8383285 ~ 8384224 (-) True G69156
TU90581 other upstream 376235 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 3250112 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 3584407 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 3584407 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 3788803 32801858 ~ 32806295 (-) True AMCG00014824

Expression Profile