RNA id: AMCG00014733


Basic Information

Item Value
RNA id AMCG00014733
length 1425
RNA type mRNA
GC content 0.37
exon number 6
gene id AMCG00014733
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29120951 ~ 29129042 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAGATATAACACCTTGGTGCACTTGATCACTACCAGTACAGGAGCAGACATTAGAATATGGACTTCTTTTCCAGAAACCAGTAGACTTTACCTcggtaaaaataaatgtaaataaatgtttttgcagGCTAATAGTATGCGAGGGAATGCGTTCACTGTGGGGGtccttctgcttctgcttctgtgggatgttcaaaCTCAAGAATTCCTTTATAAAGAGCTCCAGGTAGGGAATAATGTTTCTTTCAACTGCTCCAACAAAACATTTGATCCAGTGTTGTATGAAAACTGGAAGATAAACAGGACAAGTGGGAGTAAATGTATGGTGGTTTTACGATTtgataacaacaatacaaacagcACTTGTGACGACCCTCGGATAACAATTCAGAGAGTGGGTGACAGATCCGTCCTCCATATAGCACGCTTTGAACACACTGATGCAGGGGATTACTCCTGTGAGACAGTTTACACTGGTGGAACGGATTTTCTGCACTTTAAAGTAATTGCTGTGGtcaACAACACCATTGAAGATGATAGGGatcaaactgcattatatataattttattggGCATTACTGGTTTGATAACAGTTTCTTTGGTGATATCTGTTATTTTCATGAGGAATCTAAATGCTCAAAAAAGCCGCCATAACCAAACATTGGACCCCACAGCTTTTGGATTCAACAGAGGAGAGGAACTACAAGACTGTGAACCATATTCCATATACATAGAAAAGAAGAATGCAATCTATGACTATTAAATAAAGGTGATGTGTGTTGCCCAATACAAACTGACAAGGAGAGAATGCAAATCACATGCAACACTTTTCTATTACCTGTGGAAAATGTAGACTTGGGAAATTATTCTatatctgtaattaaatatagGGAGAGGGacgggttttttttttaaatcttaccAACAAAGTTCACGTATGCTACATTTTTGTtacacatttgtataatttaaatgtcatgaGTCTGTCCTCTGCAAATGTTGCTTCTTGTGGTTAATTTGTTCTCATTGTATCACACATCAGTAGCATTGTGCAGATACTGAACTTTCCAGATTAGGGTTCATGAATGATGTTGCACCAGACACATGAACTTTGGTGCTTCTGTCTGCATTCTCCggctttttttgttattgtttgaaAACCTGAGACCTTGAGCTGCCGTGCATTACATTGCAACTGACAGTTATTATTTGTGTCAGAAGTATCTGTGGTTATTAAGTTATCTCTGACGAAAGACATGTCTAGCAAACAGTCTTTGCATCAAGTTCATCATACAAATTAATACTGAGCAAGTGTTGTGCTATCTAATAATTAAAGGTTACAGTTATTCTGTTAAAccatgtttttgtatgttttattttaccagtGTGTTGACAAAAATGCATTAACGCATTGTTAATAAAG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90429 lncRNA upstream 129652 28989607 ~ 28991299 (+) True G72354
TU90428 lncRNA upstream 135375 28981122 ~ 28985576 (+) True G72353
TU90416 lncRNA upstream 199661 28918976 ~ 28921290 (+) True G72341
TU90400 lncRNA upstream 283041 28836282 ~ 28837910 (+) False AMCG00014729
TU90404 lncRNA upstream 288976 28831756 ~ 28831975 (+) True G72329
TU90496 lncRNA downstream 8087 29137129 ~ 29137353 (+) True G72409
TU90507 lncRNA downstream 27983 29157025 ~ 29160425 (+) True G72415
TU90518 lncRNA downstream 62929 29191971 ~ 29192278 (+) True G72426
TU90536 lncRNA downstream 120204 29249246 ~ 29252705 (+) True AMCG00014739
TU90544 lncRNA downstream 139287 29268329 ~ 29272518 (+) False AMCG00014738
AMCG00014734 mRNA upstream 10313 29096129 ~ 29110638 (+) True AMCG00014734
AMCG00014728 mRNA upstream 204317 28905901 ~ 28916634 (+) True AMCG00014728
AMCG00014727 mRNA upstream 229983 28881917 ~ 28890968 (+) True AMCG00014727
AMCG00014729 mRNA upstream 283042 28797049 ~ 28837909 (+) True AMCG00014729
AMCG00014725 mRNA upstream 341661 28767435 ~ 28779290 (+) True AMCG00014725
AMCG00014739 mRNA downstream 118833 29247875 ~ 29256354 (+) False AMCG00014739
AMCG00014738 mRNA downstream 140596 29269638 ~ 29279149 (+) True AMCG00014738
AMCG00014737 mRNA downstream 178898 29307940 ~ 29321592 (+) True AMCG00014737
AMCG00014741 mRNA downstream 254446 29383488 ~ 29398221 (+) True AMCG00014741
AMCG00014740 mRNA downstream 271590 29400632 ~ 29421379 (+) True AMCG00014740
TU90214 other upstream 816878 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 1241151 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 1279080 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 6265305 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 10846591 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 722408 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 1635309 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 1849174 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 1850528 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 1861021 30990063 ~ 30996363 (+) True G72787

Expression Profile