RNA id: TU90544


Basic Information

Item Value
RNA id TU90544
length 273
lncRNA type sense_over
GC content 0.47
exon number 3
gene id AMCG00014738
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29268329 ~ 29279149 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAATGTTGTACCTATTTTTCAGTCGTGACTCCTAtggtaaaatatttgtatttaatatcaGTAATGACAGCTCATGGACTGTCTCTGAAGTGAGCACTGTGCCCCACAATGGCAGTGAACACAGAGTCTATCTGCTGACCTGCTCCGTCACTGGCAGACCGGCTCCCACCGTGTCCTGGAGTACTGAGAGACACGATGTCATAGAGGATTCTCAGCAGTTCACTGTCACCAACCCCAATGGTTTTCAGAGTGGATACAAATGCTTCCTCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90536 lncRNA upstream 15624 29249246 ~ 29252705 (+) True AMCG00014739
TU90518 lncRNA upstream 76051 29191971 ~ 29192278 (+) True G72426
TU90507 lncRNA upstream 107904 29157025 ~ 29160425 (+) True G72415
TU90496 lncRNA upstream 130976 29137129 ~ 29137353 (+) True G72409
TU90429 lncRNA upstream 277030 28989607 ~ 28991299 (+) True G72354
TU90738 lncRNA downstream 570949 29843467 ~ 29846586 (+) True AMCG00014757
TU90938 lncRNA downstream 1564318 30836836 ~ 30837169 (+) True G72767
TU90940 lncRNA downstream 1569042 30841560 ~ 30844670 (+) True G72768
TU90941 lncRNA downstream 1573644 30846162 ~ 30846421 (+) True G72769
TU90963 lncRNA downstream 1683387 30955905 ~ 30956284 (+) True G72783
AMCG00014739 mRNA upstream 11975 29247875 ~ 29256354 (+) False AMCG00014739
AMCG00014733 mRNA upstream 139287 29120951 ~ 29129042 (+) True AMCG00014733
AMCG00014734 mRNA upstream 157691 29096129 ~ 29110638 (+) True AMCG00014734
AMCG00014728 mRNA upstream 351695 28905901 ~ 28916634 (+) True AMCG00014728
AMCG00014727 mRNA upstream 377361 28881917 ~ 28890968 (+) True AMCG00014727
AMCG00014737 mRNA downstream 35422 29307940 ~ 29321592 (+) True AMCG00014737
AMCG00014741 mRNA downstream 110970 29383488 ~ 29398221 (+) True AMCG00014741
AMCG00014740 mRNA downstream 128114 29400632 ~ 29421379 (+) True AMCG00014740
AMCG00014736 mRNA downstream 159003 29431521 ~ 29437107 (+) True AMCG00014736
AMCG00014743 mRNA downstream 268013 29540531 ~ 29558701 (+) True AMCG00014743
TU90214 other upstream 964256 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 1388529 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 1426458 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 6412683 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 10993969 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 578932 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 1491833 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 1705698 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 1707052 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 1717545 30990063 ~ 30996363 (+) True G72787

Expression Profile