RNA id: AMCG00014752


Basic Information

Item Value
RNA id AMCG00014752
length 2629
RNA type mRNA
GC content 0.57
exon number 12
gene id AMCG00014752
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29708405 ~ 29733622 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAATCACCGCGTTGTGGCCGCGGAGCTGATGGAGCCAAAAATGGAGGAAGCCGAGGGAGGCAGTGAAGATATCACTGgGAAGAAGAAGTCAAGGTTCAAGTCGTTTAAGATCCGGCTGTttgggaagaggaagaggaaggagggTGGGACCTCAGCCTCCAAGAGCAGCTTGAAGCAGAGCCAGTCCTCCAGTGATGTCACTGCCCCTGAATCCTTGAGAGCAAATTATGACTCGGAAGAGGAATTTGGGTATCCTCAAGGTGTCCTGGCCTCTCGGGCACTGTCCCATGACAGCATCTTCATTGCAGAGAGCTCCCAGACTTCCCCAGGACCAGCCCGGGTCCTGTCGCAGGAGAACTTGAAGCTGCAGCAGAACATCCGCCTGGGCCCCCCGCCGCTGGTGATCCCCAGCAAGAGGAGCGAGGATGCAGGGGCCAGCTCTGAAGATGATGGACTGCCCCGGAGCCCCCCCGAGATCTCGCCCCTGCACGACAGCCTGGTGCGGGTCTCGACCTCCCGGGTAAACCCCGTCTCCCACCCCAGCCTGGTTTCCACTGCCCTGGGACACACTGCAGCCTGTTCACGCACTCTGCTTAGCAGGGGGGCGATGAGGCACCATAGCTCTTTGAGTTTAGCTGGGACAGGCAGCGAAGAGGAGGAGCAGGACTCCTCCCAGCCACCGTCCCGCCCCCTCTCCCCAGTGTACAGACCTTCGCCCAAGTCCGCCAGTCCCCTGTCCCCCAGTGCTGACTTCAGCTCCCCGCCTCAGCTCACCACATGCCTGGACAACTCGGCTGCCCGTCACCGGCTGTCTGTCAAACCCAGAAAACAGAGAGCCAGTGCCAGAGGGAGGAGGCCCACCCCGAGCACACGTCGACCACGCTCTGAAAGCTTGAACGATTTGGACTTCACACTCCTGGAgaatgaagaggaggaggagcaggaggtcCCCCAGGAGATAATAAGATGCTACTCCTACTCCAGTCAGGTGTCAGTCTCTGGGCCAGAGAGTGCTCAGGTCACCAAGAGCTCAGAAAACACGCCAACTCAGAATTTTCAGACTTCAGATAATACTGCTGCAAAAGAACCTGTGGCGAAATCTGAAGTTTCAGAAGCTAACTCCTCCAACAGCAGTCTAGCCAAGAGCTCGCTCAATCTCAGCCATGGAGCACAAAGTGAGCCCTGTTCCAAAGAACAGCCTTCCAGTGCTCCTAGGCTGGTAAAAACCCTGCCTTCTGTTGACAGGGTGAGAACGGCTAGAGATTCTTCTCTGACAAAAAGTTCGGTAGCCATTCAGGGAGTTGCACAGGACAGCATATCTCCAGATCTTGCCCAAGTAACAGCATCAACGCCGGCAGAGGAGGAAGCAGTGCCTGCAGCCAAGGTCAACCTCAGGCATAATCCGTCATTCAAGAAAACCAATGGTGGATCGTTCCGCTTCTCCATTTCCTCTGCTTGGGACAGGCCGAGAGCCAGCAGCTTTGTGGCAGCCGAGCCTACCGAAGTAAAGACTGAAGAGGGGGTCCTGCCCAAGACCTCTTCATACCCTAAACTCAGCCCTGTGGCTAGAACAGAAGAAACCAAGCCAGAGCTTCAGCGCACACTGGTGGCCAATCAGCAAGAAAGAAGAAACACCCTGAGGAAACAGGACGAGACCCCCTCCAAAGCAGCCAAGGAGCTTTGTGAGAAGCTGGCGCCGGCCACCAGGCTCGGAGACCCCACTGGGTGTGAGCCGGTGGGCTTGGAGGATGACGTGGGTGAGAGGTCGCCATTCGGGGTGAAGTTGCGCTCTACTTCCCTGTCTCTGAGATACCGCATGGGCTCCCACCCTGACCTCAAGGTCAAGCGCCACAGTGCAGAGGTCTGCCCCGCTGCTCCCAACTCCCAAGACCTCATCCTGCTGCCGAGGGCTGGCAAATCAGACCAGGACAAGAACTGTGAATCTCCCGGGGGCTCCCTAAAAGATGAATGCAATGTCAAGGCCAAATCCACAGAGCAGCTTAATATCAAGCCCCCATTACCCAGGAAGCCCGCGGTGCAGAACACAAGCCCCCCCACTTCCTCCACTACAGCCAAGTCTCAGCCCAAGAACCCTGAAAGGCTGAGCTTCCACAAACTTGGCGATTTTGACCTGCAGATAGATCAGCCTGTTAATCCAGAGATAGGAATTCTTACCAAGAGTGTGGCTGATGCTGGGAAGGAGAGCGACTCTTCTGGCGGGCCAGCATGGATTACAATGgccaggcagagacagagaggcttCCAGCAGCACTACAACAACAAAGAAGACACAGATCCAGTGCCAGAgggccagacagacagactgaaccATGGAGAGCACAAGccaGAGCCGGGGAGAGCTGTGTGtgaggtgcgtgtcagtgtcgAGTCCCCCACCCTACGGAGAGCTGCACCAGACAGCAGGCTGGAAGTGAAATTGGAGAGGTGGCAGGCTGCTAGAACAACCCCTGCAGAAGCTGCGCCCTGCCCAGCAGAGAAAGAAGACAAACTGCAGTCTGGCAAAGATTCTCCACTGTCTGTATCGCCGTCTGCTGCTGTGCTGGGGAAGCCGTCCTGGATGGAGCTAGCGAAGAAGAAATCACAGGCGTGGAGCGACAAGACCATGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90544 lncRNA upstream 435887 29268329 ~ 29272518 (+) False AMCG00014738
TU90543 lncRNA upstream 435887 29270851 ~ 29272518 (+) False AMCG00014738
TU90536 lncRNA upstream 455700 29249246 ~ 29252705 (+) True AMCG00014739
TU90518 lncRNA upstream 516127 29191971 ~ 29192278 (+) True G72426
TU90507 lncRNA upstream 547980 29157025 ~ 29160425 (+) True G72415
TU90738 lncRNA downstream 109845 29843467 ~ 29846586 (+) True AMCG00014757
TU90938 lncRNA downstream 1103214 30836836 ~ 30837169 (+) True G72767
TU90940 lncRNA downstream 1107938 30841560 ~ 30844670 (+) True G72768
TU90941 lncRNA downstream 1112540 30846162 ~ 30846421 (+) True G72769
TU90963 lncRNA downstream 1222283 30955905 ~ 30956284 (+) True G72783
AMCG00014753 mRNA upstream 23746 29659544 ~ 29684659 (+) True AMCG00014753
AMCG00014747 mRNA upstream 51316 29653193 ~ 29657089 (+) True AMCG00014747
AMCG00014745 mRNA upstream 58595 29643776 ~ 29649810 (+) True AMCG00014745
AMCG00014746 mRNA upstream 94368 29588801 ~ 29614037 (+) True AMCG00014746
AMCG00014743 mRNA upstream 149704 29540531 ~ 29558701 (+) True AMCG00014743
AMCG00014751 mRNA downstream 2269 29735891 ~ 29739643 (+) True AMCG00014751
AMCG00014754 mRNA downstream 54104 29787726 ~ 29829991 (+) True AMCG00014754
AMCG00014757 mRNA downstream 109968 29843590 ~ 29844077 (+) False AMCG00014757
AMCG00014761 mRNA downstream 359790 30093412 ~ 30094212 (+) True AMCG00014761
AMCG00014760 mRNA downstream 366364 30099986 ~ 30142954 (+) True AMCG00014760
TU90214 other upstream 1404332 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 1828605 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 1866534 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 6852759 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 11434045 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 117828 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 1030729 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 1244594 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 1245948 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 1256441 30990063 ~ 30996363 (+) True G72787

Expression Profile