RNA id: AMCG00014755


Basic Information

Item Value
RNA id AMCG00014755
length 2851
RNA type mRNA
GC content 0.43
exon number 9
gene id AMCG00014755
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29843424 ~ 29852958 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGGGATTTGAAAGCACACAAGCTGCCTCACCGACATCAAAACCGGACATCAGAGAAGAAGATGGTGAAGAAGCTGCTAGTTGATGTGGACTGTGGTGTGGATGATGCCCAGGCCATAATGCTGGCACTGGCTGACCCTGATGTGCAGATTCTGGGCATCACCTGTGTCCGTGGAAACACATCTGTTGATAACGTGTGCAAAAATGTGCTGCGTGTGCTCAAGGTCTGCCAGCGACTTAAGATCCCAGTTTTCAGAGGCGCCTCCAGTTCACTCCTGAATGAGTCCCTGAACGCCAGTCACTTCCATGGGAAGGACGGTCTGGGAGAGGCCCCTGATCCCGAGGCCCCAGGACTGGAGCATGTCCAGAAGGAAGGGGCGGTGCAGGCAATGATCCGGATCACCACAGAGCATGCAGGCCAGGTCACTCTTGTTGCTACCGGCCCTTTGACAAACCTGGCTCTCGCTGTGAAGATAGATCCCAGCTTTCCCCAGAAACTGAAGggactgtacatcatgggaggAAACACAGACTGGTACAATGCAATGAGGGATGGTCCGGGCTGGGTTTTTATACAGCCCCATGTTTCCTCTACCTGCTGGGGGCTGGTGTGCAACGCCTGTGAGGAATGTTCTGTGTGGCGAGCACGAGGCAACACTACCGTCTGTGGAGAGTTCAACTTCACCGCCGATCCAGAAGCCGCTTACATTGTGCTAAACGACTACCTGTGTAAAACCTACCTTGCCACCTGGGAGTTCACATGCATGAACAAGATCCCCTGGGAATTCTGTGATCCATGGCTGGACCAGAACTCTGAGAAAGCCAGGTTCATGAAGAAGATCTTCTGCTACAGCATGGAGATGGCTAAGCAACCCAGGTTCCAGAAGGAGATGGTGGGCGGAGACGGCTTTATATCCTGTGACTCCTACGCCATGGCAGCCGCTATAGATAGCTCTGTCATAACAGAGTTGGAGGAGTGGCCAGTCAGTGTGGAGCTCTCAGGGAAGCTGACCCGAGGCATGATGGTGCTCGACAAACTGGGCCTCCTCCAAAAAGAGCACAAGGCCTTCATCATCAAGAAGTGTGACCTTGAGAAATTTAAAAGTATGATGATGACAGCTCTGAAATGACCTCATTGATTGTTCTTACAAGGCTCCAGCACTGTTTTTCAGCAACAAACACGGATCAAGTAATCGTTTGTGAAACCAGCTTGCGTCTATCAATAAGTTATTtcatctgtaattattttaaattgtccTCGTGCTTTTGTGGAACATTTGTGGAATTCAGGTTATGAACTGGACCCTTTGTAATTATTCAGTAGAAGGAAAGCAAACCAAGATCATGTGACATTTTGTGTACTTCTATTGAAGTTTGTGTAATAAGCTATACATAGTCTTGACATTTAATTGACTTTATCTTTTAACTTTCTGAACTAAAAGGTTACATTGCTCAAATAGTTTTGCtggtatttttataaaatacattttacatagttTGAAACGCATTGTAAATGTGGAATTATTTTGCATGAAATTGCTGTAGCCTGGACAGTATGTAAGATGTCTTGTCAGTCACAGTATTCTAGATTGTGTGCGATTTCTGTGATTCTGCATGTGTGTACATGACCCTGAACATTCAGTTTTTCCTTAATGTGACATCCTTTAAGATATGTACATCTTATATGTCCTATATGCAGCATAATTGCATTAAGATATACATAACAAAAGGtaattttcaatacatttctagATTTGTATCCAGATATTTCTGCTTCTTACTGatggtattttaatgtaaacaaatctAAGTTGAGAAAGATCAGCTGccaaaagaataaaataaacaatgcattttcacCTTTATTTTTTGGAATTATAAAAACCTTTGTCCATAAAGAATTTTAGAATTTGCATATGGAgtagcagaaagaaaaaataaaatgcaagaggTTGAAGAGGTACAACCTCCTTGTTTAAAAAGCAGATTAACAGGACAGGACTGTGCTCAGTGCCGTGGGTCTTTAACACAACCAGAGAAGACATGTTTTGCAAATATCAAGGATTCTTCAGTTTAGAGGTGCCCATACACAGGTATGGAGCTGTAATGGCACTCAAGTTCACACAGGTtactacattttattcataaGTTTGCCACTTACTTTTCCAAAACTGTTGGTTAGTATTGTTTTTTCCACCAGCAAAGAATCTCATTATTGCACTAGAAGATGCTAGATTCATACAAATCTTTTATGCTtatctgacaaaaaaaaaaaaaaagcttgccAACATTGCCACAATTCACATTTACACAGTAGTCATGTTGGAGTAATGTGTAGTTCTAATGGGGCAACAATGAAGGGGAACCACATCCCAAAATTATTCTTATTTGCACCTAAACCTTGTTCCTTCAGGGATCTCTCACACATCTCATGTTTTCAAGAGATGACTGGATCTTCGCTTCAATATCCTTTTCTGCCTCTGAATCGTGACCTTGTATCTatCGATCTTTTACACTCGAAGAAAGAAACCTGCAGAGCTTTGCAATGTCCTTCCTTCAGGCATTCGCTTGGGCTCTTCCCTTCCTTTCGTACACAATCGTGTTCAAGGAGACAAGACTTGAAGTCCTCTCTCACCCCCGAGCAAGCTCTGCCATCATCCTCTTTGTCCTCGTAATACTTGGGCATTGCTTTTCAACTAATGTGGCCTCTTGTAACGATAGACCTTTCCCTATCGCGTAATTATCTCCTTACAGTATACGCCACTTCAACAACGTTACTAATATTGTTATGGACGCGGCCATGTAAAAACAGAGGGGTATGGGATTGAAACGTCACACGTCTAGCACGTCTG

Function

GO: NA

KEGG:

id description
K18178 COA5, PET191; cytochrome c oxidase assembly factor 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90712 lncRNA downstream 100212 29739207 ~ 29743212 (-) True G72581
TU90650 lncRNA downstream 193782 29647588 ~ 29649642 (-) True G72530
TU90655 lncRNA downstream 281358 29560538 ~ 29562066 (-) True G72535
TU90604 lncRNA downstream 420052 29421260 ~ 29423372 (-) True G72495
TU90580 lncRNA downstream 445119 29395486 ~ 29398305 (-) False G72477
TU90767 lncRNA upstream 93759 29946717 ~ 29947061 (-) True G72629
TU90785 lncRNA upstream 115697 29968655 ~ 29982575 (-) True G72642
TU90789 lncRNA upstream 201382 30054340 ~ 30055173 (-) True G72646
TU90803 lncRNA upstream 313759 30166717 ~ 30166926 (-) True G72659
TU90829 lncRNA upstream 358184 30211142 ~ 30211396 (-) True G72680
AMCG00014756 mRNA downstream 2267 29835251 ~ 29841157 (-) True AMCG00014756
AMCG00014749 mRNA downstream 184039 29658273 ~ 29659385 (-) True AMCG00014749
AMCG00014750 mRNA downstream 192115 29650438 ~ 29651309 (-) True AMCG00014750
AMCG00014748 mRNA downstream 199721 29615521 ~ 29643703 (-) True AMCG00014748
AMCG00014744 mRNA downstream 336363 29490065 ~ 29507061 (-) True AMCG00014744
AMCG00014759 mRNA upstream 62297 29915255 ~ 29940883 (-) True AMCG00014759
AMCG00014758 mRNA upstream 97073 29950031 ~ 29951305 (-) True AMCG00014758
AMCG00014762 mRNA upstream 359180 30212138 ~ 30217061 (-) True AMCG00014762
AMCG00014763 mRNA upstream 767547 30620505 ~ 30627347 (-) True AMCG00014763
AMCG00014764 mRNA upstream 777478 30630436 ~ 30646339 (-) True AMCG00014764
TU90581 other downstream 445119 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 1510942 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 18180931 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 19045277 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 20526257 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 2410209 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 2744504 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 2744504 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 2948900 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 4916625 34769583 ~ 34769979 (-) True G73328

Expression Profile