RNA id: AMCG00014756


Basic Information

Item Value
RNA id AMCG00014756
length 774
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00014756
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29835251 ~ 29841157 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTACCCACCACGACGTACTCCCCTCAGAGCCAGGGAAATGGCAGCCTGAGCTCGCGAGATGCCGCGCGCCACACGGCAGGAGCCAAGCGCTACAAGTACCTGCGGCGAGTCTTCCACTTCAAGCAGATGGACTTCGAGTTCGCTGTCTGGCAGATGCTGTACCTGTTCACCTCCCCACAGAAAGTCTACCGCAACTTTCACTACAGGAAACAGACGAAAGACCAGTGGGCAAGGGACGACCCTGCTTTCCTTGTGATTCTCAGCATCTGGCTGTGTGGGTTTGCCATTGTGCTGGGGATGGGTGTCTTGGAAATGATGAAGCTGCTATTATGGGTGGTCTTCATTGATTGCATTGGAGTCGGCCTACTGATATCAACATTAATGTGggtcatttcaaacaaatatctGATGAAGCATCCGAGCAAAGACTATGATGTGGAATGGGGTTATGCCTTTGACGTGCACCTCAACGCCTTCTACCCACTGCTGGTGATTCTGCACTTCTTCCAGCTGTTCTTCATTAACCacattgtttttataaactCCGAATGGTTCATTGGGTGCCTTGTGGGTAACACCCTGTGGCTGATTGCCATCGGCTATTACATCTACATCACCTTCTTGGGCTACAGTGCATTACCCTTCCTGAAGAACACAGTCATCCTGCTGTATCCCTTCGCGCTGCTGGTCTTGCTGTACCTGGTCTCTCTGGGCCTGGGCTGGAACTTCACCCGAGGCCTCTGCTTTTTCTATAAGTACCGGGTGCAGTAG

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0005637 nuclear inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90712 lncRNA downstream 92039 29739207 ~ 29743212 (-) True G72581
TU90650 lncRNA downstream 185609 29647588 ~ 29649642 (-) True G72530
TU90655 lncRNA downstream 273185 29560538 ~ 29562066 (-) True G72535
TU90604 lncRNA downstream 411879 29421260 ~ 29423372 (-) True G72495
TU90580 lncRNA downstream 436946 29395486 ~ 29398305 (-) False G72477
TU90767 lncRNA upstream 105560 29946717 ~ 29947061 (-) True G72629
TU90785 lncRNA upstream 127498 29968655 ~ 29982575 (-) True G72642
TU90789 lncRNA upstream 213183 30054340 ~ 30055173 (-) True G72646
TU90803 lncRNA upstream 325560 30166717 ~ 30166926 (-) True G72659
TU90829 lncRNA upstream 369985 30211142 ~ 30211396 (-) True G72680
AMCG00014749 mRNA downstream 175866 29658273 ~ 29659385 (-) True AMCG00014749
AMCG00014750 mRNA downstream 183942 29650438 ~ 29651309 (-) True AMCG00014750
AMCG00014748 mRNA downstream 191548 29615521 ~ 29643703 (-) True AMCG00014748
AMCG00014744 mRNA downstream 328190 29490065 ~ 29507061 (-) True AMCG00014744
AMCG00014742 mRNA downstream 371375 29454042 ~ 29463876 (-) True AMCG00014742
AMCG00014755 mRNA upstream 2267 29843424 ~ 29852958 (-) True AMCG00014755
AMCG00014759 mRNA upstream 74098 29915255 ~ 29940883 (-) True AMCG00014759
AMCG00014758 mRNA upstream 108874 29950031 ~ 29951305 (-) True AMCG00014758
AMCG00014762 mRNA upstream 370981 30212138 ~ 30217061 (-) True AMCG00014762
AMCG00014763 mRNA upstream 779348 30620505 ~ 30627347 (-) True AMCG00014763
TU90581 other downstream 436946 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 1502769 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 18172758 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 19037104 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 20518084 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 2422010 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 2756305 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 2756305 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 2960701 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 4928426 34769583 ~ 34769979 (-) True G73328

Expression Profile