RNA id: AMCG00014768



Basic Information


Item Value
RNA id AMCG00014768
length 924
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00014768
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30728363 ~ 30741144 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGCTCTTGCCAATGCCCTGCCAACCACAACAAGAAGGTGTTTGCTCATGCAGGGGAGCTAGTACTTCTGAGCTGTAGATCCCATGTGAGTCTGCTGAGTAATGAGACACTCGTCTGGAGTGTGAACTCAACACTGGGCTTCAGGGAGCTGACAGAGAGCCAAAACGTGATGTTTGAGGGAAGAAATCTCATACTGCTCGGTGTCACATTATATGATACTGGACTTTACCAGTGCAGCCTTCGGAATGATACCAGTATCGTGCTTTTGGATCAAGTGAATTTAACAGTGTACAAAGGAGACTGctacacagaaaaatatatccGGAGAGTAGATGAATATGTTGGAAAATCTGTTACTCCGTGTCGTTCAATGAAGGATTGCATTCCATTCTCTACACCAACAATTACCTGGGTGAAGGACTGTAATCAACATAAGGAAGAGTCTGAAAACGTACACATTGACAGTCTTGCAAAAAGCGATGCTGGGAAATATACTTGCATATACACTTATGAATTTGGGGggaaacaatacaatttgtCTGAAACAACATATCTTGTTGTAAATGCGTTTGCCGACACAGTGCTGGAGTACATTGACAAGAGCAGGCGACTGATAATGATACCCAGTACAGACTGCAGGGACGAGAGTCAGTATGAGCTTGTAACAGGTCTGCATAACGCTCTGGTGGACAGGAAAATACAAATCGTCTTTATTGAATATGACTCGGCCACGGATATGGACTTGCTGCAGGAGTCACTCAGGCTTCTTGTAAAGTCAAACAAGATAGTCAAGTGGAAGGGCAGCAAATCCATAGACTATCACTCACCTTTCTGGAAGAAACTCCGCTACATGATGCCAGCAAAGAAACTGCTATCTAGCTCAGAGGAGGAATTAATGCTCTCAGTGCAGCAAAAAAGCATTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU90738 lncRNA upstream 881777 29843467 ~ 29846586 (+) True AMCG00014757
TU90544 lncRNA upstream 1455845 29268329 ~ 29272518 (+) False AMCG00014738
TU90543 lncRNA upstream 1455845 29270851 ~ 29272518 (+) False AMCG00014738
TU90536 lncRNA upstream 1475658 29249246 ~ 29252705 (+) True AMCG00014739
TU90518 lncRNA upstream 1536085 29191971 ~ 29192278 (+) True G72426
TU90938 lncRNA downstream 95692 30836836 ~ 30837169 (+) True G72767
TU90940 lncRNA downstream 100416 30841560 ~ 30844670 (+) True G72768
TU90941 lncRNA downstream 105018 30846162 ~ 30846421 (+) True G72769
TU90963 lncRNA downstream 214761 30955905 ~ 30956284 (+) True G72783
TU90969 lncRNA downstream 262228 31003372 ~ 31003788 (+) True G72789
AMCG00014774 mRNA upstream 17943 30700206 ~ 30710420 (+) True AMCG00014774
AMCG00014779 mRNA upstream 67768 30659601 ~ 30660595 (+) True AMCG00014779
AMCG00014772 mRNA upstream 118259 30594129 ~ 30610104 (+) True AMCG00014772
AMCG00014770 mRNA upstream 179841 30545213 ~ 30548522 (+) True AMCG00014770
AMCG00014769 mRNA upstream 196864 30525993 ~ 30531499 (+) True AMCG00014769
AMCG00014777 mRNA downstream 64479 30805623 ~ 30812287 (+) True AMCG00014777
AMCG00014771 mRNA downstream 106028 30847172 ~ 30851142 (+) True AMCG00014771
AMCG00014781 mRNA downstream 166025 30907169 ~ 30917566 (+) True AMCG00014781
AMCG00014784 mRNA downstream 282399 31023543 ~ 31027002 (+) True AMCG00014784
AMCG00014783 mRNA downstream 300747 31041891 ~ 31044741 (+) True AMCG00014783
TU90740 other upstream 876542 29851450 ~ 29851821 (+) True G72605
TU90214 other upstream 2424290 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 2848563 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 2886492 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 7872717 22855342 ~ 22855646 (+) True G71525
TU90928 other downstream 23207 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 237072 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 238426 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 248919 30990063 ~ 30996363 (+) True G72787
TU91144 other downstream 975974 31717118 ~ 31754930 (+) True G72925

Expression Profile