RNA id: AMCG00014771



Basic Information


Item Value
RNA id AMCG00014771
length 915
RNA type mRNA
GC content 0.51
exon number 6
gene id AMCG00014771
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30847172 ~ 30851142 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTCACCAGCCACTTGCTCGTCATGAGACTCCTGTCCCAGGCACTTTGTCTGTGCTTGGCACTGGCCCTGTGCCTAGCTGCTCCCCCACATCATGGTATTGCATCTGACCACCAAGGGCAAAACTCTGGAGACCACCATGGGCAAAACTCTGGAGACCACCATGGGCAAAACTCTGCAGGCCACCATGACAGCCACCATGATGTTGCTCACTTAGGTCGTTGCCAAGGGATAGAGTTTGATGCCATTGCCCCAGATGAGAAAGGCACCATTTACTTCTTTAAGGGAACCCATGCGTGGAAGGGATTTGAGGGCCCAGAGCACAATGTGACTGAGTTCTTCCATGAGTTGGACGACCACCATGCGCTGGACCACATTGATGCTGCTTTCAGATTGCACCGTGATCCTGACACCGCGGACCACAAGCACCACGATGACCACGACCATGACCACATATTCTTATTCCTGGATATTGTCTCACTTCATGACATCAGTGAAACTTTCCATCTCTTCCTGCAGGGTGACAAGGTCTACAGCTACTATAACCACGCATTGGAAGCTGGTTTCCCCAAAGCGATCCACGATGTGTTCAAAGGAATTCCTGATCACCTGGATGCAGCTGTGGAGTGCCCCAAGGGAGAGTGTCAGGGAGACTCTGTCCTCTTTTTCAAAGACTCACATGTGTATCACTTTGACCTGAAAACCCAGATTGTCAAGACGAGAGACTGGTCTCACCTGACCAACTGCACTTCTGCCTTACGCTGGTTGGGCCGCTACTACTGTTTCCATGGCCACCAGTTCACAAAATTCCATCCTGTGACCGGAGAAGTGACTGGAGATTATCCCAAAGACACCCGCAACTACTTCATGCAATGCCCTGGCTTTGGTAAGTGGGAGAGGAACATGGGATCTTTGTAG

Function


GO: NA

KEGG:

id description
K18977 HPX; hemopexin

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU90941 lncRNA upstream 751 30846162 ~ 30846421 (+) True G72769
TU90940 lncRNA upstream 2502 30841560 ~ 30844670 (+) True G72768
TU90938 lncRNA upstream 10003 30836836 ~ 30837169 (+) True G72767
TU90738 lncRNA upstream 1000586 29843467 ~ 29846586 (+) True AMCG00014757
TU90544 lncRNA upstream 1574654 29268329 ~ 29272518 (+) False AMCG00014738
TU90963 lncRNA downstream 104763 30955905 ~ 30956284 (+) True G72783
TU90969 lncRNA downstream 152230 31003372 ~ 31003788 (+) True G72789
TU90976 lncRNA downstream 292281 31143423 ~ 31147877 (+) True AMCG00014786
TU90997 lncRNA downstream 426945 31278087 ~ 31282858 (+) False G72815
TU90999 lncRNA downstream 426945 31278087 ~ 31287434 (+) True G72815
AMCG00014777 mRNA upstream 34885 30805623 ~ 30812287 (+) True AMCG00014777
AMCG00014768 mRNA upstream 106028 30728363 ~ 30741144 (+) True AMCG00014768
AMCG00014774 mRNA upstream 136752 30700206 ~ 30710420 (+) True AMCG00014774
AMCG00014779 mRNA upstream 186577 30659601 ~ 30660595 (+) True AMCG00014779
AMCG00014772 mRNA upstream 237068 30594129 ~ 30610104 (+) True AMCG00014772
AMCG00014781 mRNA downstream 56027 30907169 ~ 30917566 (+) True AMCG00014781
AMCG00014784 mRNA downstream 172401 31023543 ~ 31027002 (+) True AMCG00014784
AMCG00014783 mRNA downstream 190749 31041891 ~ 31044741 (+) True AMCG00014783
AMCG00014786 mRNA downstream 294627 31145769 ~ 31146137 (+) False AMCG00014786
AMCG00014787 mRNA downstream 390159 31241301 ~ 31264255 (+) True AMCG00014787
TU90928 other upstream 41431 30764351 ~ 30805741 (+) False AMCG00014777
TU90740 other upstream 995351 29851450 ~ 29851821 (+) True G72605
TU90214 other upstream 2543099 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 2967372 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 3005301 27835503 ~ 27841871 (+) True AMCG00014704
TU90965 other downstream 127074 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 128428 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 138921 30990063 ~ 30996363 (+) True G72787
TU91144 other downstream 865976 31717118 ~ 31754930 (+) True G72925
TU91344 other downstream 1691368 32542510 ~ 32561489 (+) True G73103

Expression Profile