RNA id: TU90976


Basic Information

Item Value
RNA id TU90976
length 2894
lncRNA type sense_over
GC content 0.37
exon number 2
gene id AMCG00014786
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31143423 ~ 31147877 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTATTGGTGccgagagagaggggtggggggaaaagaggggtgggagagagaaacaatacGATTCAACCAAATTATTCCGCTGCTCCGTCACTCCAGCCTCGCTTTATTAGGGGCATCATTTTAATCTTATCTCTTATACCATCTGCAAACTCAGCTCGACAGCACAAGAGGAGGATTTTTTCTCCCTCGTCCCCATCCCCGAGTTGCTTCTATAggagtgttgtgtttttttttcagcagagagaagaagaagagatcTCACTTTCCCCTAGACCTTTATCAGCAAAGCCATCTCTATTGTTTGGGGTCACAAGACGACAGCCACCACTTTGGCAAGATTTTATCTTCAAACAAAAcccaacaacaaccaaaaaaaaaaagtcaaccgCAGCTTTCCGATTAAAGGAGAAATCTCAATATGATTTAACAATACCAATAATTACTAAGCACATGCAATTCAGACTAATTGACAACAATACACAGatcataaaaacaacagcagtttGTGCTTCTGTTAAAGCAATACTACCGTTTTAGGCCTTCTTAAattgaatataataattttacagaGACTGGAGAATGGCGATGTCAAGGACTGGATAACATGTGCTATTGTAACAGAACCCCCAAAAAACCCTTGTGTTGGTTTTGATCGCTGCTGGGAATACCCTTACAGAGAAACGTCAAGGATCTACAgttaataaactttaaaaaaagactttaaCAAGatttccCTTTTTCATCCTAACCCGaagacaaatcaataaatacatcaaaactgaaaatgatgcTGAGCCCTGACCAACCCGACTCTGATCACCCTTGGGCTCAGTCGGACGCGGAATCGGTCCTCAACGACATGAAAGTCGGCTGCGTTTCGGACGAGCCGGGCGACGGGGACGGAAAGACCCGAGCCCTGGCTCCCCAGACCCTCAGCCGGGAGGAGAAGCGCAGGAGGCGGCGAGCGACCGCCAAGTACCGCTCGGCCCACGCCACACGGGAGAGGATCCGGGTGGAGGCTTTCAACGTGGCTTTCGCAGAGCTGAGAAAGTTACTGCCCACCCTGCCCCCTGACAAGAAGCTGTCCAAGATTGAAATCCTAAGGTTGGCCATCTGCTACATCTCTTATCTCAACCATGTGCTGGACGTTTAGAGCTGGAGCGAATTCAAGTTTTCCTTTAAAGAGCTGAATGCGGAGAATGAAgatagtggggggggggagaaatcaaaaacacttatttgcatacaaaaaaaatacaagcagGATAAGGTTGGGAAAGCACTGAAAGAGAAACACCAATCTCTGGCctttgctgctgttttaatagaagtgtttttatttggcaAAGCAGTAGAGGGGTTTGCAACCAAATGGGGAGTAAATCTTGCTACTGTTATCGACTCTCACCCTAAATTCTCCACTACTGACAGATGCAGGTGTAACATCCCggtgctggaaaaaaaaaaaactaaaaatgaacgctgtaatttgttgttgtaaagtctgtcatttaaaatagcaAAAACAAGAATGCAATAATTGAGCAGGGGTTGCAAAAAGTGATCTGTGTAGGCAGGTTTGGGGATACATTCTTGGAAGCGTTCAAATTCATCTCcaaatattttgtaaagtttttaaCCTTGGCTACGAGCTGCCTATGTGGCATGGTTGATTAAAAAGCAACCAAGAGGAaggagaaaaggggaaaaaaaacatagctgCTTCAAATAGTGTGTGCTGATTTCCAtgtaaaaggggaaaaaactgaaaatatttaagATAAGTGCCACTTCTTTTACGAAACATAAAATTGTGaccttaatatttatttattgattgattgattgatttgtttgtttatttaggctatagatttatattttttttcttatttttttactatgtGTGTCGTTATTTTTATGGTctgttgtttacattttaaatgtgtatgtgtacttATCTCTATTTTAGCCTGTGTTTTTGGAGTACAAAAGTGATATTTTTGCTCTTCTATTGCACTTGTCAGTGGTTTTCtgttaaaaagtattttgtaaattgaattgtatgtcatttatgttttaatttattttattttgtttgtttgtttctgcctATGGCAACAATAAGCACTTCACTTTGGGTAGATCCCTTAGATAACTTGTTGATATCCACGTCGTTTGAAACATGTAGATTTCTGAAAACGTTTTAAGGGGATGGTTGCTTGGAATTTAATGAAACTCATTAAAGTCATTAATCCAAAAATCgcaataaacataaaataacgtGTCTGttgtttaaacacaaataaaggcTGGTTAAAATgagtctatttaaaaaaagaaaacaccaaaaCAGCGTTATTTTGCCCCTGGTACAGTTTTATCACAATCTGCACACCATACGGTCTTGTACACTTTTGAATACAATGGTTAAATTCCAGGTTGCCTTTCCTTTGCTGCGACCAAAAATAGGATTATTtcgattatttatttatttatttatttatttatttatttatgtgtgtttgttaatttatgattgtttgtttgttattttgtgtaattgtttcTGCTGTGAACCtcttaaaacaataactgaTTTTTatagtgaaaaaatacatatctgcTATCCAAAGATTTTTGTCTTTTCAGGGTTTTTATCGTGTCTTCGTTGCTTTATAGCACATATTTTGTAGTGAAGTAGCTATAATAAGCTGGTTTCTAATGAACACAGTTTTTCATATCTTAATGGTGagctgttttgaaataaatatataaaattgattggtctgttttgtgtttaattttcaatCGCTTTAATTAGATTTATAGTAACAAATACTATATTCTACTTATTCcagctatacatttaaaacaaaaaaacaattaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90969 lncRNA upstream 139635 31003372 ~ 31003788 (+) True G72789
TU90963 lncRNA upstream 187139 30955905 ~ 30956284 (+) True G72783
TU90941 lncRNA upstream 297002 30846162 ~ 30846421 (+) True G72769
TU90940 lncRNA upstream 298753 30841560 ~ 30844670 (+) True G72768
TU90938 lncRNA upstream 306254 30836836 ~ 30837169 (+) True G72767
TU90997 lncRNA downstream 130210 31278087 ~ 31282858 (+) False G72815
TU90999 lncRNA downstream 130210 31278087 ~ 31287434 (+) True G72815
TU91052 lncRNA downstream 314269 31462146 ~ 31463811 (+) True G72861
TU91067 lncRNA downstream 372469 31520346 ~ 31523187 (+) True AMCG00014793
TU91076 lncRNA downstream 376438 31524315 ~ 31592105 (+) True G72875
AMCG00014783 mRNA upstream 98682 31041891 ~ 31044741 (+) True AMCG00014783
AMCG00014784 mRNA upstream 116421 31023543 ~ 31027002 (+) True AMCG00014784
AMCG00014781 mRNA upstream 225857 30907169 ~ 30917566 (+) True AMCG00014781
AMCG00014771 mRNA upstream 292281 30847172 ~ 30851142 (+) True AMCG00014771
AMCG00014777 mRNA upstream 331136 30805623 ~ 30812287 (+) True AMCG00014777
AMCG00014787 mRNA downstream 93424 31241301 ~ 31264255 (+) True AMCG00014787
AMCG00014788 mRNA downstream 149873 31297750 ~ 31308262 (+) True AMCG00014788
AMCG00014792 mRNA downstream 165096 31312973 ~ 31330675 (+) True AMCG00014792
AMCG00014793 mRNA downstream 364931 31512808 ~ 31520404 (+) False AMCG00014793
AMCG00014800 mRNA downstream 533654 31681531 ~ 31696173 (+) True AMCG00014800
TU90967 other upstream 147060 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 163171 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 164598 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 337682 30764351 ~ 30805741 (+) False AMCG00014777
TU90740 other upstream 1291602 29851450 ~ 29851821 (+) True G72605
TU91144 other downstream 569241 31717118 ~ 31754930 (+) True G72925
TU91344 other downstream 1394633 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 2216878 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 3091057 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 3632245 34780122 ~ 34780590 (+) True G73329

Expression Profile