RNA id: AMCG00014793


Basic Information

Item Value
RNA id AMCG00014793
length 1386
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00014793
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31512808 ~ 31523187 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAAGGAAGTAATTTTCCACTGGATTGAGAGAAGCACTACGCTTCCCAGAATGCTATTCGGTCGGTTGTGGACTACAATAACCACAGCGCTTTGCGTTTCCGTTGTGATATCCGTTTATGCGCACTTGGTTTGACCTACACTGGAGCAGGAGAAAATGGCAGCGGCAGGTTTTGGACAGCGGGTGCGCCACTTTAGCACTACTGTGGTCAAACCAGCTACAAAGCTTATCAAGCCTCCCATTCAGGTGTATGGTGTGGAGGGCCGCTATGCCACTGCTCTGTACTCTGCTGCCTCAAAGCAGAAGAATCTGGACCAAGTGGAGAGAGAGCTGGGTCGTGTTTCTACCTTGTTGAAGGATCCCAAGATGGCCAGCATTGTTCTCAACCCCCATGTCAAGCGCAGTATAAAGCAGAAGACCTTCAATGACACTCTGACAAAAGAGAAGCTCTCCCCAATAACTATCAACTTCATCAATGTGCTGGCTGAGAATGGCCGCCTGACACGGGCTGCGGATGTGGTCCCTCTGGATCCAGCCAATCTAGCTGAGCTGCAGACTGCTCTCAATGGGTTTCTGCAGAAGGGGGAGATTCTGAAGCTGGAGGCCAAGtctGACCCATCCATCCTTGGAGGAATGATTGTCAGTATTGGGGATAAGTATGTAGATATGTCTACGAAAACCAAGATCCAGAAGCTGACCAAGATTATGAAGGAGACCTAAATATGTGGACTGTTTGGAAGCAAACCTTTATTCTGTTCTGCTTTTCAGCAGGGATTTAAACCTCGTCAGCCTGTCATTGTGCATAATAAATATTCTGTAATGTATAAACTGGTCAAAGTCAGTTGTAATGGAATGTTTGTGCCTAAATAGCCCTCCAGGGCTTTGTAGGGTGGggtgtgtttttaatcaataaCCAGGAGTTTCTCTATAGAGCCATTTGTGCAGTGTTGCTAACTAAGATCATTTTACAGGAATCTGCTTCACTATGGGTTTCACTTCAGAAGTTTGATCCTATAAACTTCTGTGAAGTATAAAGTATTTGCCAggtaattcttttttttgtcctgcAAATACTTTTATCATTTAATCTATTTTGAAATTCCAAGAGCAATACTGCATATCAAATGAGTGTAATGAAACTGAGGACTTCACTATAGCTGAATTTCCAAGAAACTTAATTCCTTAATTTAACCACCACCAAGTAAGTGCATTACCTTTGCTATTAAATGTTCCCTGGACAAATACTTGGTGCCTCAAAAAAGCTGATGtttcaatatacagctctggaagtaattaagagaccactgcaaaattatcagtttctctggttttactatttataggtatgtgtttgggtaaaattaacatttttgttttattctataaa

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91052 lncRNA upstream 48997 31462146 ~ 31463811 (+) True G72861
TU90999 lncRNA upstream 225374 31278087 ~ 31287434 (+) True G72815
TU90997 lncRNA upstream 229950 31278087 ~ 31282858 (+) False G72815
TU90976 lncRNA upstream 364931 31143423 ~ 31147877 (+) True AMCG00014786
TU90969 lncRNA upstream 509020 31003372 ~ 31003788 (+) True G72789
TU91076 lncRNA downstream 3911 31524315 ~ 31592105 (+) True G72875
TU91126 lncRNA downstream 181758 31702162 ~ 31702435 (+) True G72911
TU91127 lncRNA downstream 182742 31703146 ~ 31703573 (+) True G72912
TU91145 lncRNA downstream 225119 31745523 ~ 31746900 (+) True G72926
TU91158 lncRNA downstream 270497 31790901 ~ 31792354 (+) False AMCG00014799
AMCG00014792 mRNA upstream 182133 31312973 ~ 31330675 (+) True AMCG00014792
AMCG00014788 mRNA upstream 204546 31297750 ~ 31308262 (+) True AMCG00014788
AMCG00014787 mRNA upstream 248553 31241301 ~ 31264255 (+) True AMCG00014787
AMCG00014786 mRNA upstream 366671 31145769 ~ 31146137 (+) False AMCG00014786
AMCG00014783 mRNA upstream 468067 31041891 ~ 31044741 (+) True AMCG00014783
AMCG00014800 mRNA downstream 161127 31681531 ~ 31696173 (+) True AMCG00014800
AMCG00014801 mRNA downstream 186844 31707248 ~ 31709519 (+) True AMCG00014801
AMCG00014798 mRNA downstream 206882 31727286 ~ 31741350 (+) True AMCG00014798
AMCG00014804 mRNA downstream 232872 31753276 ~ 31763835 (+) True AMCG00014804
AMCG00014805 mRNA downstream 243776 31764180 ~ 31765038 (+) True AMCG00014805
TU90967 other upstream 516445 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 532556 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 533983 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 707067 30764351 ~ 30805741 (+) False AMCG00014777
TU90740 other upstream 1660987 29851450 ~ 29851821 (+) True G72605
TU91144 other downstream 196714 31717118 ~ 31754930 (+) True G72925
TU91344 other downstream 1022106 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 1844351 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 2718530 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 3259718 34780122 ~ 34780590 (+) True G73329

Expression Profile