RNA id: AMCG00014798


Basic Information

Item Value
RNA id AMCG00014798
length 2034
RNA type mRNA
GC content 0.54
exon number 13
gene id AMCG00014798
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31727286 ~ 31741350 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTTGATCATGTTGGGCTGACCTGACTACAATGGACCCAGAGGAAGTGGAGCTGCTGAATGACTACCGCTACAGGAGCTACTCCTCCGTCATCGAGAAGGCGCTGAGGAACTTCGAATCCTCCACAGAATGGGCTGACCTCATCTCTTCGCTGGGCAAGCTCAACAAGGCTTTGCAGAGTAACCTGAAGTACTCCCTGCTCCCAAAGCGCCTCATCATTGGCAAGCGCTTGGCCCAGTGTCTCCATCCTGCCCTGCCCAGCGGGGTCCACTTGAAAGCCCTTGAGACCTATGAAGTAATTTTCAAGATAATTGGCACCAAATGGCTGGCCAAGGACTTGTTCCTTTACAGCTCTGGGCTGTTCCCCTTGTTGGGCCATGCATCCATGTCTGTGAAGCCGGCTCTGTTGACCCTGTATGAGAGATACTACCTCCCGCTGCAGAAGTCCCTGCTCCCCAGCCTACAGGCCTTCGTTACTGGGCTGCTGCCTGGACTGGAGGAGGGCTTGGAGGTCTATGACAGGACTGACGCCCTCCTCTTGAAGCTGTCCCTCCTGGTTGGTCAGAAGGTGTTCTACAGCGCTCTGTGGGGCAGCGTCCTGATCAGTCCTGCGATCCGCCTCCCGGCCTCCCTCTTTATCGTCAATCACTTCAACAAAGCCGAGTCGGGCAAGAAGCAGAACTACATGCTGGGATCAGACCACAAACTGGTGATGAAATCCATTGGTTTATCGCTGCAGGACTCCAATGTCCTTGTGCAGAGAAACATGCTGGAAATCCTACTTTACTTCTTCCCTTTCTATACATGTTTGgaaCCTGAAGAAAGGAGTATTCCAATAAACCACAACGAGATGGTCAATATTGTCTCGGCGGCGTCGCTCACACTCCTGAGAAGAGACATGTCCCTAAACAGAAGACTGTATGCATGGCTTTTAGGTACAGACATTAAAGGGGGTATTTTAGCCCCGGATCCTCACATGTCCACCTCTGTTGAGGACCATGCTGCATTTTACTTTGAGAAATACTCCAGGGGGCTTCTGGTTCAGGCTTTGATCAGCATCCTGAAGCAGAAGCACATGGAGCCCGAAGTGGATAACGTACACTCTTACCTGAAGCCCTTCCGAATCCTGATCAGCCTACTGGACAAGCCAGAAATAGGTCCACAGATCATGGGAGACCTTCTCTTGGAAGCCATAAGGGCCTTGTATGGCTACTGCAAAGACATGCTGGGTAAAGACCTACTTCTCAGCTCCAGCCATGGTGGGAACCAGCTGGCCAGcataattaaagaaaacaagaacGCCTCTGAAATCATCAAGACCGTGAACATGCTGATCAATTCCCTCAGTAGCGACTACCTGTGGGACTACATGACACGTTGCTTTGAAGCCTGCCTCAGCATGGGAATGTCTGAGGACCAGACCACAACTATGGTGAACAACAAGAGCCCCTCCGTCTCCGAGTTGTGCACTCTCATCATGTTCCTTCTGGACGTCATTCCCCTGGAACTTTACTCTGAGATCCAGACGCAGTACCTGCCCCAGATGTTGAACAATATGCTCCAGGCTCTTCATGAGCACATCGCTGAGCTCAGCCTGCTGGAGCTGACACAGGGCCTCAGGGCCTGCTTCAAAGTTCTCAGCAAGATCCAGATGCCCGTGGCCTACATGGACCTGGAGTCGGAGCCACACGACCTGGGAGAGAAGGAGCCTGTAGAGGCCAAGGAGAGTCCAAAGGAGGAGGAGCtgaaggaggaagaagaggagcaGGACCAGGAAACGATGGAGTTGACCAGGGAAGCGGAGCCTGATGGGGAGGTGGCTGTGGTGGTGCCGCTGCCCCCCCTGCGCTCGGAGGACAGCGGACTGGGCCTCAGCACCTCCCCCTCAGAGCAGTTCCGGAGCAgtcgcagcagcagcagtggtgcAGGCGGGGGGGTCTGTCCCGAGAAAGATGACGTGTGGAGGAAGGGTGGCAGTGTCCAGAACATGGCCCGCTGCGTCCAGGACATTTTAGCGGTCTTCATTGGCAGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91127 lncRNA upstream 23713 31703146 ~ 31703573 (+) True G72912
TU91126 lncRNA upstream 24851 31702162 ~ 31702435 (+) True G72911
TU91076 lncRNA upstream 135181 31524315 ~ 31592105 (+) True G72875
TU91067 lncRNA upstream 204099 31520346 ~ 31523187 (+) True AMCG00014793
TU91052 lncRNA upstream 263475 31462146 ~ 31463811 (+) True G72861
TU91145 lncRNA downstream 4173 31745523 ~ 31746900 (+) True G72926
TU91158 lncRNA downstream 49551 31790901 ~ 31792354 (+) False AMCG00014799
TU91238 lncRNA downstream 214902 31956252 ~ 31962969 (+) True AMCG00014811
TU91249 lncRNA downstream 224572 31965922 ~ 31966189 (+) True G73017
TU91250 lncRNA downstream 226006 31967356 ~ 31969205 (+) True G73018
AMCG00014801 mRNA upstream 17767 31707248 ~ 31709519 (+) True AMCG00014801
AMCG00014800 mRNA upstream 31113 31681531 ~ 31696173 (+) True AMCG00014800
AMCG00014793 mRNA upstream 206882 31512808 ~ 31520404 (+) False AMCG00014793
AMCG00014792 mRNA upstream 396611 31312973 ~ 31330675 (+) True AMCG00014792
AMCG00014788 mRNA upstream 419024 31297750 ~ 31308262 (+) True AMCG00014788
AMCG00014804 mRNA downstream 11926 31753276 ~ 31763835 (+) True AMCG00014804
AMCG00014805 mRNA downstream 22830 31764180 ~ 31765038 (+) True AMCG00014805
AMCG00014803 mRNA downstream 24714 31766064 ~ 31769661 (+) True AMCG00014803
AMCG00014799 mRNA downstream 49603 31790953 ~ 31798463 (+) True AMCG00014799
AMCG00014802 mRNA downstream 61580 31802930 ~ 31825314 (+) True AMCG00014802
TU90967 other upstream 730923 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 747034 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 748461 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 921545 30764351 ~ 30805741 (+) False AMCG00014777
TU90740 other upstream 1875465 29851450 ~ 29851821 (+) True G72605
TU91344 other downstream 801160 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 1623405 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 2497584 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 3038772 34780122 ~ 34780590 (+) True G73329
TU91622 other downstream 3200661 34942011 ~ 34960447 (+) True G73343

Expression Profile