RNA id: AMCG00014799



Basic Information


Item Value
RNA id AMCG00014799
length 1140
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00014799
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31790901 ~ 31798463 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGTAAAGTCTTTCTGACCTCAAAGGCTCTAACTATGCTGGACAGGTTGATCAAACACAATCTGAATGAGAAGGAGGAGCTGTTGACTTCTCTGGAGGAGATGCAGAAGGAAAATGAGAACAATGGCTTGCCAGTAATCACAAGCTACTACTCTCTGGCTCCTAAAAGGGGGAAATACATATCCATTATGGCCCCAGAAAGCTCTAAAAGTAAGAAGGCCAAGGAAGATGACACCCACAATGCTGTGGAGTGCCTAGATGCCACACCCTGCTCCTCCAACTCCACTGATTCTCCTCCCAGACCGCACTGCTCCTCCATGGCATCCCAGACTGAGGTCAGAAGCCCCATTAAGCAGGAGAGTCTTTCTGAGAGAAAACTTATTTGCCAGATGCAGGATTTAAAGATGACATTTCAGGAGCTGACAGAAATGAGGAGAGTGCAATTTCAGATGCTAGAGAAGAACAAGCCAGATGCAGGCAGGTCCCAGGCTGCAGGGTCCCTATCAGATGTGGGCCGCAGAGAGGCTGAAAAACCGCAGGAGTTGTTGCAGGAGGTGGAAAAGCAGTGGAAAGTCCTTGAAGCtgcaaaaaaacacttcaaagcaACAATGACCAACTGGACCAGCTAGATTCAGCAGCAGTTACAAGAGAGGCTGTAAAATCTCTGTCTGAGCATTGGGAATCTGCTGGACTTGGAACAAGTGAACGATGAGAGTGATAAAATTGATAATGTACTGAATCAAGTCTTGAAACACATCTAAACGGTGCAGTCACAGCCTCTTGTAGGTTTTGGAAatcaaaaaacatgtattcctGTTTTGAGAGAATCATCTTTTATCCATTTTGATGTGCTTCGGATTTGTTGGTTGTCTCTAGGTTTGTAACAAGAGCTAGTTGCTACAGATCCACGAGGAAGAATGAGCAGCTCTCCACACTTGAGATCATATCAAATTTTATACTGTtcctattttttatatttggtaGTGCTGATGTTTTCGATTTACTTACCTGTATTTTAGagttttataaacattttatagttTTCTGTCCTTAGGTTTTGTTAATGGCAAAAttcttgatatatatttttacatacatgtctcagtgtgtcagtgactgGCTGTCTGTTTAGATAAATTACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU91145 lncRNA upstream 44053 31745523 ~ 31746900 (+) True G72926
TU91127 lncRNA upstream 87380 31703146 ~ 31703573 (+) True G72912
TU91126 lncRNA upstream 88518 31702162 ~ 31702435 (+) True G72911
TU91076 lncRNA upstream 198848 31524315 ~ 31592105 (+) True G72875
TU91067 lncRNA upstream 267766 31520346 ~ 31523187 (+) True AMCG00014793
TU91238 lncRNA downstream 157789 31956252 ~ 31962969 (+) True AMCG00014811
TU91249 lncRNA downstream 167459 31965922 ~ 31966189 (+) True G73017
TU91250 lncRNA downstream 168893 31967356 ~ 31969205 (+) True G73018
TU91254 lncRNA downstream 173522 31971985 ~ 31995538 (+) True G73019
TU91281 lncRNA downstream 457546 32256009 ~ 32256776 (+) True G73045
AMCG00014803 mRNA upstream 21292 31766064 ~ 31769661 (+) True AMCG00014803
AMCG00014805 mRNA upstream 25915 31764180 ~ 31765038 (+) True AMCG00014805
AMCG00014804 mRNA upstream 27118 31753276 ~ 31763835 (+) True AMCG00014804
AMCG00014798 mRNA upstream 49603 31727286 ~ 31741350 (+) True AMCG00014798
AMCG00014801 mRNA upstream 81434 31707248 ~ 31709519 (+) True AMCG00014801
AMCG00014802 mRNA downstream 4467 31802930 ~ 31825314 (+) True AMCG00014802
AMCG00014807 mRNA downstream 66668 31865131 ~ 31890448 (+) True AMCG00014807
AMCG00014808 mRNA downstream 98477 31896940 ~ 31915838 (+) True AMCG00014808
AMCG00014811 mRNA downstream 141090 31939553 ~ 31962971 (+) False AMCG00014811
AMCG00014810 mRNA downstream 214721 32013184 ~ 32014391 (+) True AMCG00014810
TU91144 other upstream 36023 31717118 ~ 31754930 (+) True G72925
TU90967 other upstream 794590 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 810701 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 812128 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 985212 30764351 ~ 30805741 (+) False AMCG00014777
TU91344 other downstream 744047 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 1566292 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 2440471 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 2981659 34780122 ~ 34780590 (+) True G73329
TU91622 other downstream 3143548 34942011 ~ 34960447 (+) True G73343

Expression Profile