RNA id: TU91158


Basic Information

Item Value
RNA id TU91158
length 908
lncRNA type sense_over
GC content 0.38
exon number 3
gene id AMCG00014799
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31790901 ~ 31798463 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATTTGTAATGCGTTTAATAATCAACCTCATCTAACTTGTCTTTCCCCACAGCGTAAAGTCTTTCTGACCTCAAAGGCTCTAACTATGCTGGACAGGTTGATCAAACACAATCTGAATGAGAAGGAGGAGCTGTTGACTTCTCTGGAGGAGATGCAGAAGGAAAATGAGGCAATGGAAGCTGAACTAAAAACTGCCCGATGGAAGCTGTACGTCTCCTTAAAAAAGATGCACGGTGGCCACAGCAGTGGCAGCTGATTGGTCTTTGTCTGGACCGGGAGCACGtcaattttgtattatgtttttttttttttttctcatttgatacattcatttgagactataacttcaataattcagtcatatacaactaatcatGACAGTTGACTGCGGCAactgtaggctacttaaaatgGGTTAAAAATTAAAGCTTGTATGTCATGTGAACTGTGGGTCCAATTTCTGATGTTCAGATGTTTTAATAACATCTGAACATCaggaatcaaacccacaatGCTGGGCTCACATGACATACAAGCTTTAATTAGAAACCTGGTTTAAGTAGCCTATAGCTGCCGCAGCTaactgtcctgattagttgtaCATGACTGCATTTTTTAAGATATAGTCTCACATGAATTGATGAAttaaggaaaaaacattttaataaataataaaaagtgtatgtgtgtgtgtgtgtgtatattatatttatacctATATATGTAGGTATACGTGTTCTATGGGTCTACAATAAGTAATAGCACTCATGATTACAAATGCTCAAGGGGAGAACATATGATGGGGGTGAACTGTTGTGGGGACAAATTGTTATTGGGGAATTGTGGTGTTGGGGAATAGCTACAGGGATCAACTGTAAGGGACCCGACCAGCTGtgtgttaattaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91145 lncRNA upstream 44001 31745523 ~ 31746900 (+) True G72926
TU91127 lncRNA upstream 87328 31703146 ~ 31703573 (+) True G72912
TU91126 lncRNA upstream 88466 31702162 ~ 31702435 (+) True G72911
TU91076 lncRNA upstream 198796 31524315 ~ 31592105 (+) True G72875
TU91067 lncRNA upstream 267714 31520346 ~ 31523187 (+) True AMCG00014793
TU91238 lncRNA downstream 163898 31956252 ~ 31962969 (+) True AMCG00014811
TU91249 lncRNA downstream 173568 31965922 ~ 31966189 (+) True G73017
TU91250 lncRNA downstream 175002 31967356 ~ 31969205 (+) True G73018
TU91254 lncRNA downstream 179631 31971985 ~ 31995538 (+) True G73019
TU91281 lncRNA downstream 463655 32256009 ~ 32256776 (+) True G73045
AMCG00014803 mRNA upstream 21240 31766064 ~ 31769661 (+) True AMCG00014803
AMCG00014805 mRNA upstream 25863 31764180 ~ 31765038 (+) True AMCG00014805
AMCG00014804 mRNA upstream 27066 31753276 ~ 31763835 (+) True AMCG00014804
AMCG00014798 mRNA upstream 49551 31727286 ~ 31741350 (+) True AMCG00014798
AMCG00014801 mRNA upstream 81382 31707248 ~ 31709519 (+) True AMCG00014801
AMCG00014802 mRNA downstream 10576 31802930 ~ 31825314 (+) True AMCG00014802
AMCG00014807 mRNA downstream 72777 31865131 ~ 31890448 (+) True AMCG00014807
AMCG00014808 mRNA downstream 104586 31896940 ~ 31915838 (+) True AMCG00014808
AMCG00014811 mRNA downstream 147199 31939553 ~ 31962971 (+) False AMCG00014811
AMCG00014810 mRNA downstream 220830 32013184 ~ 32014391 (+) True AMCG00014810
TU91144 other upstream 35971 31717118 ~ 31754930 (+) True G72925
TU90967 other upstream 794538 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 810649 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 812076 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 985160 30764351 ~ 30805741 (+) False AMCG00014777
TU91344 other downstream 750156 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 1572401 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 2446580 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 2987768 34780122 ~ 34780590 (+) True G73329
TU91622 other downstream 3149657 34942011 ~ 34960447 (+) True G73343

Expression Profile