RNA id: AMCG00014800


Basic Information

Item Value
RNA id AMCG00014800
length 1437
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00014800
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31681531 ~ 31696173 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGGATTTACATGAACTATTCAGGAAGAATAAAATCCATTGACAGTCAGAGAGTTTTTATGTAttggttttaaataaaggatGCATTTGAATGTGCAGTGTACGAAATGAACAATTCACTGGTGCTTCTTTTCATATGTTGAGaagaagacttttttttaaactatAGCTTTTTCTGTCAATTCCCAAAGCAAGAGATTTCTGCATTGGGTTTTCAGCTCAGAATGAAGGGACTTTATTGCAAGCTAAGTGAAAGTGCAGAACAAGTGAGGTTTGTCATCCAAGAAACGGAAATTCCAAATGTGCTCGGCAGCCATTGTGTCAAAGTTCAAGTAAAGGCCTGTGCACTTAGTCCACTTGATATCAAGCTCCTGAAAGACCTGAAGTTGCAAAGAGAGTTGGTGCCAGTGGGCAGAGAAATTGCCGGCGTTGTGCTTGAAGttgGACCAAAGGTTACATTTTTTCAACCTGATGATGAAGTTGTGGCCGTTTGGTATAATTACCATCCAGTTAGCTCATTACCATGGAGCAAAGGTGCTGTCTACCACTTTGTCAGTTGAAGACAAGCAGTTTCTGGAGCAGTTACGACCAACCATTGCCAGGGTGATAAACATGTCAGATGGGAAGGCTGACCTGGTGGAAGTCTGTCTGGAGGAAACCGGTGGCCTGGGAGTGGACATTGTCATTGACGCTGGAGTGCGGCTGTACAACACAGATGAGGAAACAGCAATCAAAAAACTCCTCCCTCACAAGCACGACATCATCATGCTTCTGGCTGTTGGAGGTCACTGGGTCACCGCAGAAGAAGGCTTACAGCTGGACCCTCCAGACAGCCGAAGCCTCTTTCTGAAAGGAGCCACTCTTTCCTTCTTGAACGAGGAGGTGTGGAACGCCTCCAGTGCTTGCCAAGGGAAGTACCTCCATATAATGAAAGATGTGGTTGAGAAGCTATCAAATGGGACATTCAGGCCGCAGTTGGAAGACCCAGTTCCTTTGTACGAAGCCACCGTTTCCATGGAAATGGTTCAGAAGAAGCAAGTCAGGAAGAGGCACGTTATTCATCTCTGAGGCCCTAGAGTCCAGCGAAAGCAAGCATGTCTCTGGAACGCTGCCGCAACattcagaaaaaggaaaaagaaaagaaagaaaggaagggcCTGTACACATTTGCTCCGAGCTGGAGTCATCCTGTGTTTGAAAGGACTTGCATCGTGTGATTGCATCTTCCCCAAAAAAGCAAGCAGTAAGTTTTTTAGATGCTGTACATAGTACTTCACAATTCCCACACAGATGTCTGTTTCTTCTCACTAGATCAGCCCCTCATCCAACCCATTTGTAGATGTCCGATGTTTGAAACATCCACCAGGACATCCAGTGTGCTTGGCATCTTATGATGTGATGTGCCGACTCTTGTtatcagtaaataaatgcattccaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91076 lncRNA upstream 89426 31524315 ~ 31592105 (+) True G72875
TU91067 lncRNA upstream 158344 31520346 ~ 31523187 (+) True AMCG00014793
TU91052 lncRNA upstream 217720 31462146 ~ 31463811 (+) True G72861
TU90999 lncRNA upstream 394097 31278087 ~ 31287434 (+) True G72815
TU90997 lncRNA upstream 398673 31278087 ~ 31282858 (+) False G72815
TU91126 lncRNA downstream 5989 31702162 ~ 31702435 (+) True G72911
TU91127 lncRNA downstream 6973 31703146 ~ 31703573 (+) True G72912
TU91145 lncRNA downstream 49350 31745523 ~ 31746900 (+) True G72926
TU91158 lncRNA downstream 94728 31790901 ~ 31792354 (+) False AMCG00014799
TU91238 lncRNA downstream 260079 31956252 ~ 31962969 (+) True AMCG00014811
AMCG00014793 mRNA upstream 161127 31512808 ~ 31520404 (+) False AMCG00014793
AMCG00014792 mRNA upstream 350856 31312973 ~ 31330675 (+) True AMCG00014792
AMCG00014788 mRNA upstream 373269 31297750 ~ 31308262 (+) True AMCG00014788
AMCG00014787 mRNA upstream 417276 31241301 ~ 31264255 (+) True AMCG00014787
AMCG00014786 mRNA upstream 535394 31145769 ~ 31146137 (+) False AMCG00014786
AMCG00014801 mRNA downstream 11075 31707248 ~ 31709519 (+) True AMCG00014801
AMCG00014798 mRNA downstream 31113 31727286 ~ 31741350 (+) True AMCG00014798
AMCG00014804 mRNA downstream 57103 31753276 ~ 31763835 (+) True AMCG00014804
AMCG00014805 mRNA downstream 68007 31764180 ~ 31765038 (+) True AMCG00014805
AMCG00014803 mRNA downstream 69891 31766064 ~ 31769661 (+) True AMCG00014803
TU90967 other upstream 685168 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 701279 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 702706 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 875790 30764351 ~ 30805741 (+) False AMCG00014777
TU90740 other upstream 1829710 29851450 ~ 29851821 (+) True G72605
TU91144 other downstream 20945 31717118 ~ 31754930 (+) True G72925
TU91344 other downstream 846337 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 1668582 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 2542761 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 3083949 34780122 ~ 34780590 (+) True G73329

Expression Profile