RNA id: AMCG00014807


Basic Information

Item Value
RNA id AMCG00014807
length 5570
RNA type mRNA
GC content 0.42
exon number 17
gene id AMCG00014807
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31865131 ~ 31890448 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCTAGCTCTGTCCGAAGTTCTTGCACACAAATTCTACCAGTCACACTTGGCCATTTAGTGCAATCGCTGAATTAATAGaCAATGCCTATGATCCAGATGTGAACGCCCAGCAACTATGGATAGACAAGACACTGATAAGGGACAAGGAATGTCTGATATTCATGGACAATGGGAATGGCATGAATTGggataaaatgcataaaatgctGAGTTTTGGCTTCAGTGATAAACAAACCATAAATGGCCATGTCCCAGTTGGCTTGTACGGGAATGGCTTTAAATCGGGGTCCATGCGCTTGGGCAGAGATGCCATTGTGTTCACTAAGAATGGCACAACAATGTGTGTGGGGCTCCTGTCACAGACGTACCTGGAGAACATCAAGGCAGAGCATATTGTGGTTCCAATTATTACTTACTGTCAGAAGAGTCATATCCTTTCAATTCCCTTACGCAGAATAAACGACCAAGGCAAAGCCAGCCTGAATGCCATCCTAAAACATTCTCTGTTCCGCACCGACTTTGAGCTGACAGAAGAGCTGATGGCCATCATGGGCCCTTGTGGAACCAGAGTTATCATTTGGAATTTAAGGAAGATGTCAAACGGGAAGACAGAATTTGATTTTGATACAGACAAGTACGACATACGGATACCGGCTGACATTTTGGAAAACACCAGCGAGAAATATAAGAAACAGGAGAGGATGGAGCAGTCGGTACCAGAGAGTGACTACTCACTGCGGGCCTACTGCAGTATTTTATACTTGAAACCCCGAATGCAGATCATTCTAAGAGGACAGAAGGTGAAAACCCAGCTGATTTCCAAAAGCCTGGCATACATTGAGAGAGACATTTACAGACCATCATTTCTGAATAACAGAAATATCCGGATAACATTCGGATACAACACAAAAAGCAAGGAGCAGTATGGAATAATGATGTACCACAGGAACAGGCTCATTAAAGCTTACGAGAGAGTGGGATGCCAGCTCAAGGCAAACAATATGGGTGTGGGGGTGATTGGAGTCATTGAGTGCAATTTTCTGAAGCCGACTCACAATAAACAAGATTTTGACTACACCGATGAGTACAGgaAAACTATTCAAAATTTGGGCTCAAAACTTATGGATTACTGGAAAGAAATCCGGTTCAAGCGTAATGCAAATGATCCGAACACAGTGCCGGTTGAAGATACACAGAAGCGACCCGATCAGAACTGGGTTCAATGTGATGACTGTTTGAAGTGGAGGAAACTCCCTGATGGCATAGACAAGCTACCTGACAAGTGGTACTGTAGAATGAACCCTGATCCCCAGTTCAGGAGCTGTGAGGTTCCAGAAGAGCCTGAAGATGATGATAACGACCATCCCACTTATGAGAAAACCTACAAACAACAAGAAGGCACAATGGAGGATGCAaggaaaaaagcagaaatggaCAGATATGTCAATGAGCAGAACCACATTCTTCAGTTGAAGCACAATGAGCTGAAGAGGCAATTGCGTGAAAATAATATCCAAGTCACAATGTCTGCAATCCCCAATCCCGATGTCCCCTCTGGCAGTGGCAACAACATGAACAACATGCCAAAGATCACAGATGTCCGCTCTCTGTCAGCTGCAGGTCCAAGGATAAAACGCACAATGCCGGTGGCCTCAGGCAGCTCAGAAAGCAAGAAAGCAAAGATAAATGGTATTCACAATAGTGTGGCGGCTGCCGGAACTTCAGAAAACGACACAGATATTATGATCGTTGAAGCCAAGAGTACCCCGAAACCGGCTGCCAGTTTTGACCTGGCCAGGGTCAAAGTGGAGTGCAGAGACAGCATGGAGAACACTGGCCTGCGCATGGAGTGCAGCGAAGATGCTGGCTTAGAGACGCCAAATGAAACCatcactgcccccccaccatcCTCCCCCTCCACCTCGGCTACTCCTCCTCTCGAACTGCAAGTATCCACAACAACCCAGACTGAGGTCAAAGCCCCATTGAAACGGGAGGAAAGCCTTCCTGAGGAGCCAGTGGAAACCAACGGGTTGCCAATGCAGCAGGAGGAGACGGCTGTTGCCATGGAGGAGCTGAAGCAGGTACTGGAAGAGGCCAAGAGCCAAAAGAAAGATCTGCAGAAGGctctggaggaggcccagaGGCAGCAGGATGAGCTGATGACACTGATGCAGACCACGGCACAGGAAAGGGACAGCTACCAAGAGGAGGTCCACAGGCTCACATGCCTGGTGGTGGATTTAGAGAAGGAGGTTCAGCAGCTGACAGGAAAGTACGTGAAGAAAGAAGTGTGCCATAAGGCTACAGAGACAGACCAGCAGGATGCAAGAGAGTGCCTGACATCAGAGCCCTTTTTAGACAAGTACAGCGCAGAGCCAAGCGAGACGCAGAAGCTGTATGAGCAGTCGCAAAAGGAAGTGGAGAAGCTGAGAAAGAGGTGCGAAGCCCTGGAGGCAGAACAAGCCAAGTGCAGCACGAACCAAAGTGACGTTGACGACTTGGCCCTCCAGCTGGATTCTCTTTTAAGAAACCTGGACAAGAGCAATGAAGAGAGagataaatgcaaaattaaaCTTGAAACACTGGAGGCAGAGAAAGTGCAGATGGCTTCAGAGTGTGAAAAGCTGAAGAGAGCCATTGATAAGCTGACCTCGGAGACTGAGAGGAGGACAGAAAACGGAACCTGCAGTTCCACCGTTGCCGAGGAGGAAGCAAAGACATCCCAAGAGGACACCTGGAGGCTGCGAAATCTCCGTTTGAGCATTGGGAAATTGCTGGTGACATTTGTCCCAGCTCTGGACTTGGAGCAAGTGAACTACGAGAGCGATGTCATTGATGAGATCTTGGAACAAGTGTTGGATCAAGTGACATTAACTAGCAACACGTAGAACATAAGCAACTGCAATGCTGCCTCTTGTGGGGTGAATTGCAGCCCTTGGTTACCATACTTGGTTTTGGGGGGGGTGCTTCTTTGACCTCTTTCTTTAAAACTGAGAAagacaaccaaaacaaatgctgAATGTAAAGAATTCCACTATCTATAATGgacatatttttctatttttattatttttgtaactttACAAAAAACTGAATCAAAATGTGCACAGACCTAGTCATtgctaatagtaataatttctgtaaaaaaaacttCCACACTGTTGATGTTTATGGGTGGAGaacagcaaaatgtttttttttttttttttttttatgaaaggtTAATTAAGAAGAATCAAATGCTCTGTggtattcttatttttaaatgtgtacatttttaacagtGAAGACAGTtggatttatattttcatgCCTGTTATATTGTATGCAAGAGCCCAGGGTAggtaacaacaataattaatgaAGGGAAATGTATCCAAACtagtttgcatttttgtatcaTGACTGCAATATTCTCTTGTGATTTTGAGAGCAGCCTTTGGCGccttcagatttgtatttgctCTTCTCAACAAGTGCCTCCACTGCTTGGCACCTATATGCTCATATCTTCCACAAGCAGAACTAGGGTGGCAGTTGTCTTCAGTGGAAAGTCTTCCTTACATAACCTTGTGTGGACTGAAACTTTACTCTCTGAAAGCAGGGGCCTGCATTTTCCTACCTGAATGTACCAGCTTTTTTCAGAGGCATTTTGGTGCATTCCTGTCCGTTTTTGGGAACATCAACTGAAGATTGTTTATAATGTctgtatctgtttgttttgtgtgattatGGAAACTTATCTTCCCAGTATCAATTCTTAATGCTTAAGCATTCGAATATGACTTTGTGCCAAATGTAGCTAGATTTTCCTGACTGGCTAGTGCCCCATATTCACATATTGAGATCATAAGCCATTGGGTAATTGCCATTTTATTCCTAAAACTCTTTGGCTTAAGTCTTACCGCCAGCATGGATCTGTCAGCTAATATTAAGCAAACTCCTTAACAAATATGGTGCAGTCAGCTCAGGAAATACAAccttgttgatttttttttatttataattactgAACATTAATGTTGCAAAGAAAACGTTTTCTATTTTCATGCAACTTGTAAAtaaaattcttttttttttttaacaaacaattgTTTgggaaattatacatttgttgcTAGGGGTGTTTTGTTATAGTGATTAGTGGGACCTATTTTTGCTTTGGTATCAGCTTGCTATTCTTTGATGATACTACACATCAGCATTTAGCACGTTGCTTCAGTACTGCTGCCTATTTCAAGCACGTTTGTCAACTATTCATATCAGTGATGATTTGCTGGTGGTCTTTTATTCAGCATCTCTTTTTCTCCtgtaggatttattttcttctatgtGTTGTCTTCCACAGTACACATTCATGCAAACACAAAGCTTTCCAACAGCCCTTAACTTTTATGTTGCATCAATGCTTCACAATGCACATCATGCATTATTTGTCTTCCTCTCCACCATTATTTTTCCTAACAAGTCAACTTGACCAATTGAAAtcgtaattaataataatgaatacaatttctGGCTCAGATTTTctttaatgcatgttttttttgtttgatgtgCTGAAAAGGTACTTACCAGCCACAGGGCCTCTTCTCTCTTCCCTTGTATTCTAACTGCTTGTGCTAACACCTTAACACCATATTCTTTAACTAGCCCTTGGGCAATATCCAAAGTAAAACCTTTTTATCCCTTGAATAATAGTGTTCTTTATGTAATGCTTCTGTTCCTCCTGTTAACATGCACTTTGCTCACAGTTTTTGTACTTCTGTAGAACAGAAAACACCTTTTATGTTTTagtagtatgtttttttttttgtttattatgttattCTTTGCACAGGGATATTTGCATCTTCTGAAAGTCTGCGAGTTTGCACAATAAAAGCATAGACATCTTTgacgtttaaaaaaaataataaattcgTCTTGACTGACCTGAAAATGATGTACACTTTGCAGATCCAGAAAATGCATATTGCATACATCCTGACAATTTTAATGACTACGAGGGATTACTGCAGTCCTTTATGTAGAGGAGCTGACACATAATGGAATAAATGGAAGTTGTTCTCATTCCTGTTCATCCCAGAGTTTTTCTGTGGGGCTGAGAAAAGATGAAGAGCACATGAAGAGCATGTCCTTACAGACGAGAGCcaaaattttaattttgttccttACAAGAATAAATCGGTGTATCTCCCCATCCATTATGATGGTGGTGTCATGAGTAATTTGATTATATACTATTATCTTCTATTGAAAAAACTGGAGTTTTTCAAGATTAAGAGAGACAGATTGTGGAGGGCTGCAGTCTTTCATTAAATTCCCACTAGAGCTCTCAATTACCTAATTATTCTAGTTATGTGTTAGATATGACATTGTTTTAGGGCCTTGTACAGTTGATGGTTTATCATTCTATTCAGTGTATACTACCTGTCACATAATCTGAGGCATGTAGAAAAGTGCATTTCATGCAATTAATTAGCCAATCAGACCAATACAGTATCGGAGCTGGGTTGAAGGAAGAACCAAAAGGACCCTGGCCTTGGGGGAATGGAGTTGGAG

Function

GO: NA

KEGG:

id description
K24135 MORC; MORC family CW-type zinc finger protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91158 lncRNA upstream 72777 31790901 ~ 31792354 (+) False AMCG00014799
TU91145 lncRNA upstream 118231 31745523 ~ 31746900 (+) True G72926
TU91127 lncRNA upstream 161558 31703146 ~ 31703573 (+) True G72912
TU91126 lncRNA upstream 162696 31702162 ~ 31702435 (+) True G72911
TU91076 lncRNA upstream 273026 31524315 ~ 31592105 (+) True G72875
TU91238 lncRNA downstream 65804 31956252 ~ 31962969 (+) True AMCG00014811
TU91249 lncRNA downstream 75474 31965922 ~ 31966189 (+) True G73017
TU91250 lncRNA downstream 76908 31967356 ~ 31969205 (+) True G73018
TU91254 lncRNA downstream 81537 31971985 ~ 31995538 (+) True G73019
TU91281 lncRNA downstream 365561 32256009 ~ 32256776 (+) True G73045
AMCG00014802 mRNA upstream 39817 31802930 ~ 31825314 (+) True AMCG00014802
AMCG00014799 mRNA upstream 66668 31790953 ~ 31798463 (+) True AMCG00014799
AMCG00014803 mRNA upstream 95470 31766064 ~ 31769661 (+) True AMCG00014803
AMCG00014805 mRNA upstream 100093 31764180 ~ 31765038 (+) True AMCG00014805
AMCG00014804 mRNA upstream 101296 31753276 ~ 31763835 (+) True AMCG00014804
AMCG00014808 mRNA downstream 6492 31896940 ~ 31915838 (+) True AMCG00014808
AMCG00014811 mRNA downstream 49105 31939553 ~ 31962971 (+) False AMCG00014811
AMCG00014810 mRNA downstream 122736 32013184 ~ 32014391 (+) True AMCG00014810
AMCG00014812 mRNA downstream 352506 32242954 ~ 32255291 (+) True AMCG00014812
AMCG00014815 mRNA downstream 506239 32396687 ~ 32397508 (+) True AMCG00014815
TU91144 other upstream 110201 31717118 ~ 31754930 (+) True G72925
TU90967 other upstream 868768 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 884879 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 886306 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 1059390 30764351 ~ 30805741 (+) False AMCG00014777
TU91344 other downstream 652062 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 1474307 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 2348486 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 2889674 34780122 ~ 34780590 (+) True G73329
TU91622 other downstream 3051563 34942011 ~ 34960447 (+) True G73343

Expression Profile