RNA id: AMCG00014812


Basic Information

Item Value
RNA id AMCG00014812
length 4125
RNA type mRNA
GC content 0.56
exon number 6
gene id AMCG00014812
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 32242954 ~ 32255291 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTGTAGCGGAAAGACGTCAGCCGTACAGTGGCAACGACTGGTGTTCGGGGGGCGAAAGTGAAGAAGACGATCCAGGCTTCTACAactGTAATTCCAGTGATGTGAAGCCTCAGGATTCGAACTCCCTCCCTTCTTCCAATGCTGGAATCAGCAGATCTTCCACACCTTCTCACAATTCTGTGGGGGTACAGAATGCGGTATCAGAACCTACAAGCAGCCAAAAGGCTCCATCAAAAGTTGTTTACGTCTTTTCCACTGAGATGGCCAACAAGGCGGCTGATGCTGTTGTGACGGGCCATGCAGAATCCATTGTTGCCTACCATATGAAGAATATCTCCAACAGCAAGACCGAGAAGACCCACCTGCCTATGaaCAATCAGTTAGGTCCTGGTCGAAATGAGCAGAAGGCCCACCAGCAGCAAGcaccaccactgcagcagcaACAGTCATCTCATCCGCCAGAGCAAAACCATCAACAGGCATCCAAAGCACAGCCCAGCCAACAGCAACCCCAACCTCAGCAGCAAGCGTCTAAACCTGGAAACTTGCCACAGGACAGTGCAGGGGGCATGGACAATAAAAGCCTGCCAAGCAGTAGTCCCAGAAACGCCACTCCCCAAGACAACACTAATCCCAGCAGTACGCCTGGTAGCCAGTCTGCCTGCACCCCTGGGCCCCAGTCAGGCTTCCCCTCCCTAGAAACCAAGGGGGATTCCAAAATGAcaccacagcaacagcagcagcagcatcaccAGCAGCTGGCTAATGAAATTATATCCAGCATGGGCGATAACCCTGAGGGCCTTTCCCAGGAGCAGTTGGAGCACAGGGAACGTTCCCTACAGACTTTGCGGGATATCCAGCGTATGCTTTTCCCAGACGAGAAAGATTTTGCTTTGAAGGATATTTCAGCCATGGGACAAGGCAACACTGGGGCTCCTCCCCAGAATGCAAACATGATGGAAGGCATACCCAAAAAAACAGATCAAGGACCCCTCCAAGCTATGATTGCCCAGTCGCAAAGCCTTGGCAAGCCGCCTGGTTCAAGGCCAGAAGGACCTCCGTTTGGGCAGCCAGGCCATAGGGACATGCCCTTCTCTCCTGATGAGTTGGGGCACCCGTCTGGGCCACCCATGAATTCACACCCAGGGCCAGAGCACTCGGATCACATGACACCAGAGCAAATGGCCTGGCTAAAGTTGCAGCAGGAATTCTATgaggagaaaaagagaaagcaggAACAGGTGCAGCATAGACCCATGACAGACATGATGCTTCATCAGCATGGTCCCAGAGCCATGATGAGGGGTCCCCCACCTCCGTATATGAACCCTGGGGAGGTCTGGGGACCTGGTGGGCCTGAACCCTTTGGTGACCAAATGAACATGCCACCAAGAGGCATACCCCCTCACCCAATGCAGAGAATGCCAGGATTCCCTGGAATGATCAATCCTGACATGGATGGTGGCCCAAATCCCATGCCCAGACCTGGCATGAACTGGCCAGATGACATGCCCAAGATGGGGGATGGAAGAGGCTTCCCTCCGGTCCAAGCCGTATTTGGAGGTCCAGGAGGCCGAGTTGAGAGATTCCCTAACCCCCAGGCAGTGCAGGAAGGAATGTTCCAGCATCAGATGCAAGATAAACAGCAAATAGGTATGCCACCAGGAATGGTTATTGACAATGTGCGAGGACCACCCATGGACATGAACCGGATGATGGGGAACCAAAGACCCATGGATCCTGGCAGTAACAATGGAGGCGGCGTCATGTTCCCCAGAATGCCGGGAGATGGCCCGATGAGCCCTTCTAGGATGGAGTTTGTCAAAGGTCCAGGGAGGGATATGGAGTTTGGTATGGGGCCTGGAAGTATGAGCATGAAAGAGATGAACCTCAATGTCAACATGGGTTCAAACCCCCAAATAATGGCTTCCAAGATGCGAGAGCCACCCATGAACCTGAGTCCTGaggaaattatgaaaatgcGACAAGGCGGTGGAGGACCACCTGAGAATGTAGGCCCCCAGCAAAAGATGCTTCAAGGACACCAGTTTTCTGACCAGCCACAGGAATTCATGGGGCCCAACCGTCACTTCCCAGGAATGCCCCCAGGGCCAGGCAACATGAGGGGGCCTCGGGGAGAGCAGCCTTTCGGGCCTGAGCAAAGGACTAATGCTGGAGGCAATGCCAGGCTCAGTCATATGCCACCACTACCTCTAAATCAGCCCCCCAATTCTGGCAATCTCAGTTCAGGCCCACCTCCCAACCAGAGGAACCTGGGACGGAAGCCTTCAGACTTGAGCGTCTCAGCCGGGCCTGTCAACTCACCCAATGTCAACCCCTTAAAGTCACCCACACTGAGGCAGGTGCAGTCTCCCATGCTAGGCTCCCCCTCTACCAACCTGAAGTCACCGCAGACTCCCTCTCAGCTGGCCGGAATGCTCACTGGTCAgtcggctgctgctgctgccgctgcggCGGCGGCGGCTGCTGCCTCCATCAAATCCCCTCCCATCATGGGCTCTGCCGCCGCTTCTCCCGTCCACCTCAAGTCACCATCTCTCCCTGCACCTTCTCCAGGATGGACGTCCTCTCCTAAGCCTCCGATGCAAAGCCCCGGCATCCCCCAGAATAACAAGCCCTCACTAAGCATGACTTCTCCAAACATGATGGGTAGCATAGAACAAGGTGGAAGTGGACCCCCCTCAGCGCCACCTCCCAACAGCTCCTCTGGGCCGCCTGGTTCTATGAATCTTCCTGGAAGTCTTCCGTCCGGCAGCCCCTACGCCATGCCACCCGAGCCCACCTTGTCCCAGAACCCCCTGTCTATCATGATGTCCCGTATGTCCAAGTTTGCCATGCCCAGCTCCACCCCCCTCTACCATGATGCCATCAAGACAGTCGCCAGCTCGGATGACGATTCACCGCCTGCCCGCTCGCCCAACTTGCCATCCATGAACAACATGCCTGgAATGGGAGTAAATCACCACTCGAACCACCCTCGCATGATGGCTCCAAACTCTTCAGGGCACATGCCCTCTCTCAGCCCCATGGGGATGAACACAATGGGGTCCCAGCCACTCTCACATGGCCTCCCAAATCAGATGCCATCACCAAACCCAATGGGGCCCAACATCCCTCCACACTCCGGACCCATGGGCCCTGGCATGATGCCACATGGTATGATGATGCCTCCTGTTTCTCAAGATCCTGGAATGGGTAACCCCCAGATGATACCTCAAGGTCGAATGGGCTTTCCTCACAGGCAACAGGGTTTCCCTTCAGTGCAATCTCCCCCACAGCAAGTCCCCTTCCCTCACAACAGCCCAGGCCCAGGCGGGGTTCAGGGGGGTTTCCCTCACGGAATGGGCTTTCCAGGCGAAGGGGGGCCCCTTAGTCGGCTCGGCAACATGCCCCAAGGCCCTGGTGGTGAACCAGGGATCTGTAAACCGAATGCCCCAGGTGGTCAAGAGCCCTTCGGCAGCATGCCCTCCGTTTTCACTGACCCCGACCTGCAGGAGGTCATCCGACCTGGTGCTTCAGGAATCCCTGAGTTTGACTTATCACGGATCATCCCTTCTGAGAAGCCCAGCCAGACACTGCAGTACTTCCCACGAGGAGAAGCTCCAGGCAgcaaacccccccacccctcaggCCCCGTACCAGGCTTCCCTCAGATGCAGGGGATGATGGGGGAGCCAAACCCCAGAATGGGACTTCCCATGCCAGGCATGGGGGGACCTGGACCAGGCCACATGGGCCCTCAGGACATGCCCATGGGCAATCCAGGCCATAACCCAATGCGGCCGCCTGGCTTCATGCCTCAAGGCATGATGGGACCTCAGCATCGAATCATGTCCCCGGCACAGACTGGTATGCCTGGGCAGCCTGGTATGATGGGTGGCCCGGGAATGATGTCAGGCAAGGAGCGAGGGCCAGGTGTTCTTTATAACCACCCGGGACCGGTGGGGTCTCCTAATATGATGATGTCTCTACATGGTATGGGTGGCCCACAGCAAACTATGATGATGCCACCTCAGATGAGGCCGAGAGGCATGGCAGCAGATGTGGGAATGGGTTTCAATCCCGGGCCAGGAAACCCGGGGAATATAATGTTCTAA

Function

GO: NA

KEGG:

id description
K22649 BCL9, BCL9L; B-cell CLL/lymphoma 9 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91254 lncRNA upstream 247416 31971985 ~ 31995538 (+) True G73019
TU91250 lncRNA upstream 273749 31967356 ~ 31969205 (+) True G73018
TU91249 lncRNA upstream 276765 31965922 ~ 31966189 (+) True G73017
TU91238 lncRNA upstream 279985 31956252 ~ 31962969 (+) True AMCG00014811
TU91158 lncRNA upstream 450600 31790901 ~ 31792354 (+) False AMCG00014799
TU91281 lncRNA downstream 718 32256009 ~ 32256776 (+) True G73045
TU91348 lncRNA downstream 302990 32558281 ~ 32564339 (+) True G73105
TU91345 lncRNA downstream 310502 32565793 ~ 32566896 (+) True G73104
TU91366 lncRNA downstream 320156 32575447 ~ 32575879 (+) True G73120
TU91410 lncRNA downstream 417220 32672511 ~ 32681805 (+) True G73158
AMCG00014810 mRNA upstream 228563 32013184 ~ 32014391 (+) True AMCG00014810
AMCG00014811 mRNA upstream 279983 31939553 ~ 31962971 (+) False AMCG00014811
AMCG00014808 mRNA upstream 327116 31896940 ~ 31915838 (+) True AMCG00014808
AMCG00014807 mRNA upstream 352506 31865131 ~ 31890448 (+) True AMCG00014807
AMCG00014802 mRNA upstream 417640 31802930 ~ 31825314 (+) True AMCG00014802
AMCG00014815 mRNA downstream 141396 32396687 ~ 32397508 (+) True AMCG00014815
AMCG00014817 mRNA downstream 398452 32653743 ~ 32663154 (+) True AMCG00014817
AMCG00014821 mRNA downstream 479577 32734868 ~ 32756137 (+) True AMCG00014821
AMCG00014822 mRNA downstream 503674 32758965 ~ 32768979 (+) True AMCG00014822
AMCG00014827 mRNA downstream 1442232 33697523 ~ 33778248 (+) True AMCG00014827
TU91144 other upstream 488024 31717118 ~ 31754930 (+) True G72925
TU90967 other upstream 1246591 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 1262702 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 1264129 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 1437213 30764351 ~ 30805741 (+) False AMCG00014777
TU91344 other downstream 287219 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 1109464 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 1983643 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 2524831 34780122 ~ 34780590 (+) True G73329
TU91622 other downstream 2686720 34942011 ~ 34960447 (+) True G73343

Expression Profile