RNA id: AMCG00014813


Basic Information

Item Value
RNA id AMCG00014813
length 2950
RNA type mRNA
GC content 0.40
exon number 9
gene id AMCG00014813
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 32270685 ~ 32285936 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTCAGTTTgcgttttatttaataaaactggaGTGGAAGGTTGGGTTTAGAACTAAGCGAGACAACTTAATTAAATCCAGTTCAGTATGAAAGTGTTTTCCTCCGTTTGACTGATTAGTTATCTTAATGAAAAAGGTGTGCTTAAGCTGAAAAGTATTCGTTATAATGTTATACACGTTCCTTAGTGTTTTAAAATTCACCTTGCTAAGTTCATTGCTACCCTTTTGCAATGAAATAGATACTTGAAATAGATTACTTGAGATTGAATAATTTCAGGACAATATCGGCGACTCTAGTTTTTGGAATGAAGACAGATACATAGGATATTGAGTTActatattagtttttttctcgTGATTGGAAATCAGTGTTTTCACGATTTACTTATAAACTGTAAAGTAACATTTGCATGCATActaagtattattaatatttattattagccTATATAACAGTTTGGACAGGTTTGTGAACAAGGTACTCGTAAAGTTTCACTTCCGTATACAGCTGTATAGGAGTGCTCCTGAGTATGTGGATGCGAGCTGGTGCGGTGAGCTCGGTAGTGTGCGGCGCGCTCTACTGGTTCCAGAACAGAGCGATGCAGGCGGACACGGGCTCCGCTAAGACGAAACCATGCACCACTTCTCATTATGAACTTAAACTGGTGCAGGTATTGTTCCGACATGGCGCCAGGACTCCACTGAAAGCCTTACCTGACATAGAGCAGGGGGGGACATTTCCTGGTCAGCTGACAACATTGGGAATGCAACAGCTCTATGATCTGGGAGAACGAATGAGAAGAACATACGTAGAGGAGATGCCATACCTCTCACCAATCTTTTgcccttcagaggtctaTGTGCGGTCAACCAACATTGTACGAACCATCGAATCAGCTAAGTGCCTGCTAGCTGGCTTATTCCAACAGAAACAAGAGGGAACCGTGAAGATCTTCACGGCTGATTCAGAAACTGAGATTTTGTATCCCAACTACCATGGGTGCAAACTGCTGAGAGTTCTGAGCAGCCAAAGATGGGCCGAATCTTCTCTCCTCCCCGATGTAGCTGCCGACCTTAAGAACGTGCTGAACCAGCTGGGCGTCCAGGCACAGAAAGGTCTTGATTTCATCCACATTCGAGATGACTTGGTGGCAAGAGAGGCCCACGGCTTACCCAGCCCTGCAGTGTTGCTGAGCTGGAAAAGCACTGTCGAACAGCGAGCCGTTGAGATGCTGCATTACATCTATGAGCCCAGCAAAAGGCAAAATCTTCAGCTTTGTGTTGGGCCTCTGCTTCATACATTGATGAAtaatattgaagaaaaacatcagGATAAGATGAAATCTGGACGCTCCAGGAAGCTGTACCTCTATTCTGTACATGACACGACTCTGGTTCCTTGTTTGATGGCTCTGGGCATCTTTGACATGAAGTGGCCACCCTACGCTGCTGATCTCACCTTTGAGCTGTACGAGCATTGCTCTTCCAAAGAAGCCTTTGTCAAAGTGTCTTATATTGGCCAGGACCAGTTAGTGAAAGGCTGCAGTGACATCTATTGTCCGCTGCAGGAATTTAAGAAAGTGCTGTCAACCTACACATTGGATTCAGCAGACTATGGAGCACTGTGCAACCAGTCTGATGATGTCACAAAGTGATCTTGGGTGTTGCACTTCTGTTTCCTGTTACGACCATGTTGGGCTACAAAATGGAAACGTGAAGGAGCAgaacagaaatcaaaataatgaccacttttcagtgcagttttcatcactgtattttgtaactgCTATGAATCTGACCCATTCTGGAAAATAACTTCCTCCAAGCTTGTTGTTTAAGGTTCATTTTAAAGTCTGAAATTCTTTCACAATTCCCATTAtgccaatcttttttttttttttttactttttaaacagtAATTGCTATGTACATATGATAAATTAAGTTGGCAGACACCTTCATCTAAGGTGACGATTCAGATCAAAGTTTTCTCTTCAGATCTCTTGTATCTTGTGTAAGGAGAGCAATTATCTTTAACAATTAGATCATTAAGCCACAATTAGAGCCCCTCATTATGACTAAAGCACATCGCCTTGCAACAGGAATTGCCTGTGCAAACACAATTACTTACACTTAATGAAATCACAAAGCGCACAAGAGTTGGATGAAGACTGCtgttaaatcatttatttatacttttacaCAACAGTGGATCTATAGGGGCTGCAAGGGACAGTGATGTATACTCAATGTGATGTGAACCTAATGTATTGGGATACctgccaaaataacaaaattattgtGTACAAGGTATTCAACAAATGAACAGGTTGCACATTGCTAGAatggaacacatttttcacagatCGAGGTGAATGTATCATGGGAGAGTTAtgtaatgtctttttttttatcatttgatGGACCATTTGAGGAATGTGTAGTGTCTGTGAAAACAGGACTACTCAAATAACATTTGGAATTTAACTCCTTTAAGTCACTGCACTGTAAAATGTAGCATTGTATTTTAACCGGAAAAGGAGCCATGTAGTCATGTGTTGAATCAAGTTTTACTGTTTTCTATGCAGATAATTTGCGTGTTTGATATTGGCTGCCGaagtttaaacaaacattttttctaACCTCATATTTCTATTGGTGATGTCAAATGCCAGTTGTGTTTCAAACACCTCATTCTGAAGTTTTCTGGAATTTTATTTTGAGGAACGGGACTGCTGTGTCATGACTGCTTCATTCTCAAAGGAAAAGGGAATAAAGTTTTGGACACCTGATTTCTTGTTCGAAAGCATTATGaataaaatctgaataatttacagattctttaaatatctacatttttttaacttaaagtGTAAAAGTGTCAGACAAGTTCTCAATGCACCAGCTTTACGTATtacttttgttaaaaataaatattataacaatccaa

Function

GO: NA

KEGG:

id description
K14395 ACP6; lysophosphatidic acid phosphatase type 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91285 lncRNA downstream 5261 32265132 ~ 32265424 (-) True G73049
TU91282 lncRNA downstream 13910 32256155 ~ 32256775 (-) True G73046
TU91232 lncRNA downstream 371740 31896940 ~ 31898945 (-) True G73005
TU91136 lncRNA downstream 572673 31697655 ~ 31698012 (-) True G72919
TU91074 lncRNA downstream 750753 31515430 ~ 31519932 (-) False G72874
TU91304 lncRNA upstream 71766 32357702 ~ 32362393 (-) True G73066
TU91322 lncRNA upstream 144661 32430597 ~ 32430951 (-) True G73082
TU91351 lncRNA upstream 164486 32450422 ~ 32466416 (-) True G73106
TU91353 lncRNA upstream 169370 32455306 ~ 32555945 (-) False AMCG00014816
TU91358 lncRNA upstream 237302 32523238 ~ 32523802 (-) True G73112
AMCG00014809 mRNA downstream 301462 31967444 ~ 31969223 (-) True AMCG00014809
AMCG00014806 mRNA downstream 480948 31769573 ~ 31789737 (-) True AMCG00014806
AMCG00014797 mRNA downstream 563163 31700627 ~ 31707522 (-) True AMCG00014797
AMCG00014795 mRNA downstream 650308 31594391 ~ 31620377 (-) True AMCG00014795
AMCG00014794 mRNA downstream 692097 31528997 ~ 31578588 (-) True AMCG00014794
AMCG00014814 mRNA upstream 36038 32321974 ~ 32322759 (-) True AMCG00014814
AMCG00014816 mRNA upstream 216381 32502317 ~ 32555533 (-) True AMCG00014816
AMCG00014820 mRNA upstream 342896 32628832 ~ 32641932 (-) True AMCG00014820
AMCG00014819 mRNA upstream 361598 32647534 ~ 32648995 (-) True AMCG00014819
AMCG00014818 mRNA upstream 364240 32650176 ~ 32653420 (-) True AMCG00014818
TU91283 other downstream 7258 32263167 ~ 32263427 (-) True G73047
TU90581 other downstream 2872380 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 3938203 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 20608192 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 21472538 10796716 ~ 10798147 (-) True G69537
TU91373 other upstream 311526 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 311526 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 515922 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 2483647 34769583 ~ 34769979 (-) True G73328
TU91914 other upstream 3294690 35580626 ~ 35608677 (-) True AMCG00014839

Expression Profile