RNA id: AMCG00014814


Basic Information

Item Value
RNA id AMCG00014814
length 786
RNA type mRNA
GC content 0.53
exon number 1
gene id AMCG00014814
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 32321974 ~ 32322759 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggaggagaagaggagacagagggagcaggaggagaATCCCCCTGGGGCTGGGGAGAAGGAGTACCTAGAAGAGAAGGTGGAGGACTCGGCCAAGGATGAATCGGGCAAGATTAAGCTGAAGGGGGCTTTGCTACAGACATATGTGTTCAGTATCCTCATTCGGACTATCATTGAGGTGACTTTCATCGTTGGCCAGTACCTTATATATGGCATTTTCCTCAAGGCCCTCTACACCTGCCAGAACTGGCCGTGTCCTCACAAAGTAAACTGTTACATGTCCAGGCCAACTGAGAAGAACATATTCATCATCTTCATGTTGGTGGTGGCGTGTGTCTCACTCTTCCTCAGCATTTTAGAGCTTTTCCATCTGGGCTGGAAGAATTTCAAACAGTGCCTGAGGGTCTACGCCGCCGCCCACATCTCTGACACCTCCGGCGCTGCTGCCTCATCCAAAGAGACTGAGCTCCCGCCCAAGGCAACACTCCCCTGCACGCCCCCTCCAGAATTTAGTCAGTGCGTGGAGGCCCCAGACTCCCGCTGCAACCCTTTCAACAACAAAATGGCTCTCCAGCAGAACTCTGCCAACATGGCCACAGAGCGCCATCGCAGCCGGGACAACCTTGGAGGGGAAGACTTCCTCCAAATGAGCTACACACAAGGGAGCGAAACCTCCAACACTTCGGTGCCCCCTCCCTTGCACGACAGCTTCTTCAAGGACAAACGCAGGCTAAGTAAAACCAGCGGATCCAGCAACAGGATCAGAACAGATGACTTGGCAGTTTAA

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91285 lncRNA downstream 56550 32265132 ~ 32265424 (-) True G73049
TU91282 lncRNA downstream 65199 32256155 ~ 32256775 (-) True G73046
TU91232 lncRNA downstream 423029 31896940 ~ 31898945 (-) True G73005
TU91136 lncRNA downstream 623962 31697655 ~ 31698012 (-) True G72919
TU91074 lncRNA downstream 802042 31515430 ~ 31519932 (-) False G72874
TU91304 lncRNA upstream 34943 32357702 ~ 32362393 (-) True G73066
TU91322 lncRNA upstream 107838 32430597 ~ 32430951 (-) True G73082
TU91351 lncRNA upstream 127663 32450422 ~ 32466416 (-) True G73106
TU91353 lncRNA upstream 132547 32455306 ~ 32555945 (-) False AMCG00014816
TU91358 lncRNA upstream 200479 32523238 ~ 32523802 (-) True G73112
AMCG00014813 mRNA downstream 36038 32270685 ~ 32285936 (-) True AMCG00014813
AMCG00014809 mRNA downstream 352751 31967444 ~ 31969223 (-) True AMCG00014809
AMCG00014806 mRNA downstream 532237 31769573 ~ 31789737 (-) True AMCG00014806
AMCG00014797 mRNA downstream 614452 31700627 ~ 31707522 (-) True AMCG00014797
AMCG00014795 mRNA downstream 701597 31594391 ~ 31620377 (-) True AMCG00014795
AMCG00014816 mRNA upstream 179558 32502317 ~ 32555533 (-) True AMCG00014816
AMCG00014820 mRNA upstream 306073 32628832 ~ 32641932 (-) True AMCG00014820
AMCG00014819 mRNA upstream 324775 32647534 ~ 32648995 (-) True AMCG00014819
AMCG00014818 mRNA upstream 327417 32650176 ~ 32653420 (-) True AMCG00014818
AMCG00014823 mRNA upstream 469122 32791881 ~ 32793425 (-) True AMCG00014823
TU91283 other downstream 58547 32263167 ~ 32263427 (-) True G73047
TU90581 other downstream 2923669 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 3989492 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 20659481 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 21523827 10796716 ~ 10798147 (-) True G69537
TU91373 other upstream 274703 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 274703 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 479099 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 2446824 34769583 ~ 34769979 (-) True G73328
TU91914 other upstream 3257867 35580626 ~ 35608677 (-) True AMCG00014839

Expression Profile