RNA id: TU91480


Basic Information

Item Value
RNA id TU91480
length 3231
RNA type TUCP
GC content 0.42
exon number 2
gene id AMCG00014824
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 32795005 ~ 32806295 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTCGAAAGCATGGGAAGTGTTTTGAATTTGCAGAGGGTGTAATGGAGTCATTGCATATAAGaaaaaaaacaaaatgatactCCACAGATTGCTCAACAGCAGAGGGTGGCCCACAATACCCAAGGCTGGGTATGCGAGAGTCTCCCAGCGCCGTGCCCACACCCTGGCTTCCATTCTCCAGACCCCGGAGATGCCTGAAAAGAAGCTCAGAGGCCTGGTCTTCCCTTTCAGCGAGCTCGAGAATCACCTCTCAAGCCGAGTGAACAAGACAAACTTCCAGTTATTCTGGCCCAGTCTGGAGGACGTTAAAAGGGCAGAGGCACTCTTTTCCCCTTCCAGAAAACACAAGATTGATTACTTCACATCAGCTGTAAGAATGGATCACGCTCCATTAATAACTCAACCAGAGGtcagtggaagaaaaaaaaatatcttaaactCAAGTAATAGCTCTGGACTCTCATGCATAAGATAGTGGGTAATTAATTGTGTCTGGTAATGTGACTgcttttaaggaaaaaaaatattctctgCTTGCATTTATTACAGAGTATGACTTTGTTGGTTCCAAATGAAAATTGAATGGTTTTTATATAACTGATGTTCTTCAGACTCAATAAGATTTAATTTTTCAGCTGTTAGTTGTTGTTAATGTATGCTTGGCCTGCAGTTGGTATACTTACCCCTTCTGCAATTTCCACTGTAGTCATTTCCAGTTTCTCAAGCAGCAAGCCTTGGGAAAAGCAGGAGAGGAATCGGACAGTGTCACTATTAAGgcatgtttccttttctttttaaataaaaaaaagtcgtAGGATCTTATGGTTATTACGGTACAAAGCAGCACCCTTAAGGCagtgctaaaaaaaatatttggcagaataaaaacttgtttttgtgttttagtttggtcatgtgttttttttttgtattatctcACTTCTCGTCTTGgttcatgtttcttttctttattataaatactgtatatttaaagaaaattgtgCCAGCTGTACAAAACCAGTGAAAACCATAAAGCTCAGTCATCTGTGAAAATGTACCCCTGCTGGAATTCTGTCCAATTTTGTAACTACAGCCTCCAGCCAGGAAAAGACTTGGTGTTTGAAGTTGCAactatcagtatcagtatcaaaTGGATCATAATTGTGAGGGAGAGTCACCAGTTATGTTCCTTAATTGTGACAGCTTCAGATGACtatactactatatatatatatatatatattgtggtgaAAGCATTTGTGGTGTCTTAAGGGTTTTGTTTCTTCAGTAATGAATATGTAGAATTGACAACTGAGAATGACttacatgttttcattaaaggAGCACTATTTCtttacaatgcaataatgaaccaTTTAGAGAACTTAAGTAGTCACACAGGTAGTCAGTACATAAGAACACATTAacactgtatttttgctttcTAAGTTTTCTAAGCGATGCTGCCCATCTCCCCTCACTTATGGTTACTGCCAGTGTGTTCCTGATTCAGCAGCGACTTCAAATGCCAGGTCTGTTCCAGGCTGGAGCTGGTTTGAAAGCAGCACAGCATTGATTGTACTGTTCCAGCAGGAAGTGGAGAATATACATATTATCAGCTGTCTCAATGGTGTTCTGCTTAGCAGGGTTTTCTTGTACTGGTGATTTAATCCCCCTGCCTGAAAAGgataatttattattaacagGCATTCCTGGTGGAAAGAGCACTAGGTACTCATTAAACCTTAAAACCCTATATTGACTTTTGGAGATTAAAGAATTGCAATGCTACCAACTAACTGCGCTGTTAGATCACTTCATAAGAGCCTGTTGGATTTGACATCTCCCTGTAAATTACGTGTTGATCGTGACAAACAAGCAAGTACAATTGCAAACTGTCAGTGAGAAAAAATCCCTACTGTATTCCTCAGATGCATTATACTGAGTGTATATCAAACCAGGGTCACAATAGAAAAAAGCTAAAAGATGTGGCTATGGCTGTCTGCTAGTATCAGCAGTGTAGAAAAACAATTTTGAATCATTGCGATGGCCTTGATTTTAAGTGCCTGTTTGCCAATGTGGTCTTGTAGAAAGCCTTGTACAAATAGTGTGAAGTGTTACTGACTGGAGAGATTGATACCCCTGCACTTGCCTTCCAATACCTTGGGTTGTACAGATTACACAGACTGATTTCTGATAGAAGATCTGACATAAGAAGGCACAGATAATGTGGCTATATAGAATTTTCTCCCACCAAAAAGATATAAAAGGgcctacttaaaaataaacacatgtatgcataccgatcagccatatcattatgaccactgacaggtgaagtgaataacactgataatctcattatcatggcacctgtcagtgggtgggaaaTATTatgcagcaagtgaacattttgtcctcaaagcaggaaaaatgggcaagcgtaaggatccgagcgactttgacaagggccagattgtgatgactagacgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcagtgaaccggtgatagggtcatgggcggccaaggctcattgatgcacgtggtcCGATcctgagctactgtagctcaaattgctgaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgtgtatggggttgtgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgccgaaagcgcctacaatgggcacgtgagcatcagaactggaccacggagcaatgtaggaaggtggcctggtctgatgaatcacgagttcaaggtgttgacttggcctccaagttccccagatctcaatccaattgagtccgatccatggaagccccacctcgcaacttacaggacttaaaggatctgctgctaatgtcttggtgccagataccacagcacaccttcagaggtctagtggagtccatgcctcgactgGTCAAGGCTGTTGACTTTTGCCGGCAAATGAGTCCTTTTATCCCCGTTaaatagcacttcacagagttttatcatgcttcttgcgttattgattgatttcttccttgctccctttccggTAGCCCtcgactgtgaccctacattttgacagcacttagcttttactttccaggatgtatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91443 lncRNA downstream 11460 32789023 ~ 32790398 (-) True G73187
TU91439 lncRNA downstream 90155 32711247 ~ 32711703 (-) True G73184
TU91438 lncRNA downstream 90813 32710797 ~ 32711045 (-) True G73183
TU91437 lncRNA downstream 91743 32709844 ~ 32710115 (-) True G73182
TU91436 lncRNA downstream 93575 32708013 ~ 32708283 (-) True G73181
TU91487 lncRNA upstream 263954 33070249 ~ 33071524 (-) True AMCG00014825
TU91497 lncRNA upstream 441042 33247337 ~ 33247621 (-) True G73232
TU91509 lncRNA upstream 513130 33319425 ~ 33319625 (-) True G73242
TU91512 lncRNA upstream 559413 33365708 ~ 33366083 (-) True G73245
TU91532 lncRNA upstream 839638 33645933 ~ 33702805 (-) True G73259
AMCG00014823 mRNA downstream 8433 32791881 ~ 32793425 (-) True AMCG00014823
AMCG00014818 mRNA downstream 148438 32650176 ~ 32653420 (-) True AMCG00014818
AMCG00014819 mRNA downstream 152863 32647534 ~ 32648995 (-) True AMCG00014819
AMCG00014820 mRNA downstream 159926 32628832 ~ 32641932 (-) True AMCG00014820
AMCG00014816 mRNA downstream 246325 32502317 ~ 32555533 (-) True AMCG00014816
AMCG00014825 mRNA upstream 264511 33070806 ~ 33119328 (-) False AMCG00014825
AMCG00014826 mRNA upstream 321383 33127678 ~ 33434382 (-) True AMCG00014826
AMCG00014828 mRNA upstream 1758191 34564486 ~ 34565202 (-) True AMCG00014828
AMCG00014829 mRNA upstream 2104298 34910593 ~ 34931646 (-) True AMCG00014829
AMCG00014830 mRNA upstream 2136680 34942975 ~ 34960249 (-) True AMCG00014830
TU91374 other downstream 182709 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 187052 32597462 ~ 32614806 (-) True G73127
TU91283 other downstream 538431 32263167 ~ 32263427 (-) True G73047
TU90581 other downstream 3403553 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 4469376 28329739 ~ 28332482 (-) True G72236
TU91607 other upstream 1963288 34769583 ~ 34769979 (-) True G73328
TU91914 other upstream 2774331 35580626 ~ 35608677 (-) True AMCG00014839
TU91940 other upstream 3295063 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 3447479 36253774 ~ 36254187 (-) True G73612
TU92007 other upstream 3566856 36373151 ~ 36393493 (-) True AMCG00014845

Expression Profile