RNA id: AMCG00014826


Basic Information

Item Value
RNA id AMCG00014826
length 924
RNA type mRNA
GC content 0.54
exon number 9
gene id AMCG00014826
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 33127678 ~ 33434382 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATgtACAGTCACATCAGCAAATCCCATTGCCGCAATGGGCAGTCTCTGCAGCGGAGAAGAAGACGGTCTACCTTGGGAAGCAGTCAGGAGAGCAAAGGGAGATGATTCAAGGTTTGAGAGTGGTGAAGGAGCTTGTCAGACCCTGGATGAAGAGTAGGAGGAATGTCATAGCTGATATCTTCTTTGCATCCATTCCTTTGAGTGAGGACCTCCTTACTGATGGACTAACCTACGTCGGCACAATGAGCTCCAACAAACCCCACATACCCCCGAATTGCCCAGAGGCAAGGCAAGGCAGTGGTGCTGCCATGACACTAAGTTGGGGACCTGAGCAGCGGGCAGAAGAGCTAGCCACAGCACTCAAAGGGAAGGTGCTCCAGGCACTCAGAGACATTGCACCACAGAGATGGCTAGACTTCAAAGCCCTGGAAAGACGTTTCGGGGAGGCGCGACGGCGACGCCCCAATGAGAGCCTGGGAGCCTTCACTGCTGACATCGGTCTCCTGGCGAGGGGGGGCTACCCTGATTTCCCCATGGCAGTGCAGGAGGAACTGGCGCTGCAAGCTTTCACCAGGGGGCTGACACCCGACGCTCTGCTGCACCAGGTCCTCATCGCCAGACCACGTACCCTAGACACAGCGCTGGCTTCTGCCTGGCACATGGACACGATCCAGTGGCACAAACTGGCAAGGTGCCAGTtcaggagagagaaaGCTTCTGTGAATGAGACCATGGGCTCAAAAGCTGAGTTCAGGAGACTGTGGGATGTGGTGAAGGTGCTGTTGTTTATGTTTCATGGACAGGCAAGTGTGGAGAGGGGGTTCTCTGTTAACAAGAAGGTTGTGGTAGAGAATCTGAAGGAGCAGTCTTTGGTTACACTGAGGTTCATCATCAGATCAGTTGGGGGAGTACgCATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91487 lncRNA downstream 56154 33070249 ~ 33071524 (-) True AMCG00014825
TU91443 lncRNA downstream 337280 32789023 ~ 32790398 (-) True G73187
TU91439 lncRNA downstream 415975 32711247 ~ 32711703 (-) True G73184
TU91438 lncRNA downstream 416633 32710797 ~ 32711045 (-) True G73183
TU91437 lncRNA downstream 417563 32709844 ~ 32710115 (-) True G73182
TU91532 lncRNA upstream 211551 33645933 ~ 33702805 (-) True G73259
TU91533 lncRNA upstream 344611 33778993 ~ 33779193 (-) True G73260
TU91537 lncRNA upstream 354474 33788856 ~ 33789222 (-) True G73264
TU91541 lncRNA upstream 376648 33811030 ~ 33811318 (-) True G73268
TU91543 lncRNA upstream 418313 33852695 ~ 33853024 (-) True G73270
AMCG00014825 mRNA downstream 8350 33070806 ~ 33119328 (-) False AMCG00014825
AMCG00014824 mRNA downstream 321385 32795005 ~ 32806293 (-) False AMCG00014824
AMCG00014823 mRNA downstream 334253 32791881 ~ 32793425 (-) True AMCG00014823
AMCG00014818 mRNA downstream 474258 32650176 ~ 32653420 (-) True AMCG00014818
AMCG00014819 mRNA downstream 478683 32647534 ~ 32648995 (-) True AMCG00014819
AMCG00014828 mRNA upstream 1130104 34564486 ~ 34565202 (-) True AMCG00014828
AMCG00014829 mRNA upstream 1476211 34910593 ~ 34931646 (-) True AMCG00014829
AMCG00014830 mRNA upstream 1508593 34942975 ~ 34960249 (-) True AMCG00014830
AMCG00014832 mRNA upstream 1738487 35172869 ~ 35180639 (-) True AMCG00014832
AMCG00014839 mRNA upstream 2147333 35581715 ~ 35592456 (-) False AMCG00014839
TU91480 other downstream 321383 32801858 ~ 32806295 (-) True AMCG00014824
TU91374 other downstream 508529 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 512872 32597462 ~ 32614806 (-) True G73127
TU91283 other downstream 864251 32263167 ~ 32263427 (-) True G73047
TU90581 other downstream 3729373 29389290 ~ 29398305 (-) True G72477
TU91607 other upstream 1335201 34769583 ~ 34769979 (-) True G73328
TU91914 other upstream 2146244 35580626 ~ 35608677 (-) True AMCG00014839
TU91940 other upstream 2666976 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 2819392 36253774 ~ 36254187 (-) True G73612
TU92007 other upstream 2938769 36373151 ~ 36393493 (-) True AMCG00014845

Expression Profile