RNA id: AMCG00014829


Basic Information

Item Value
RNA id AMCG00014829
length 843
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00014829
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 34910593 ~ 34931646 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCACTCTCATTTTATTCATCCCTGGTCAAGGATTGGTTTTATATCCACAGATTGGAGACAAGATGGATATTGTTTGCCCGAAAGTAGACTCTGGCTCAGGGGAACAGGCTGAGTTATACAAACTATACATGGTCCCAAAAGAACAGGTGGAAAAATGTACCATCACCAAAGCAGACACCCCTTTACTGAACTGCGTCAAACCAGACCAAGATGTCAAATTTACCCTCAAATTTCAAGAATTTAGCCCCAATCTGTGGGGCCTGGAATTTTTACGAAATCGggattatttcattatatCTACTTCAAATGGAACAATGGAAGGTCTAGAAAATCAAGAAGGGGGAGTGTGCCACACAAAATCTATGAAGATCATAATGAAAGTCGGACAAGATCCTAATGATCCCATATCACCAAAAGATATTCCAACAAGAACTCCACCAAAGCAGCCTGAGAGTGTTGGAAAGGACAccaaaagtaaagaaaacaacattgttGAAGACAAGCCAGAGGTGGCGCTGTTTGCGGGGATCGCTTCAGGCTGtgtcatcttcatcatcatcatcatcatgctGGTGGTGCTCCTGCTGAAATACCGAAGGAGACACCGGAAACACTCACCCCAGCACACGGCCACCCTCTCACTCAGCACCTTAGCCACGCCGAAACGTGGCGGCAACAACAATGGCTCTGAACCCAGCGACATCATCATCCCGCTCAGGACTGCGGACAGCGTTTTCTGCCCCCATTATGAAAAAGTCAGTGGGGACTACGGGCATCCGGTGTATATAGTCCAAGAGATGCCACCACAGAGCCCAGCGAACATTTATTACAAAGTCTGA

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0008039 synaptic target recognition biological_process
GO:0007412 axon target recognition biological_process
GO:0035475 angioblast cell migration involved in selective angioblast sprouting biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K05463 EFNB; ephrin-B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91615 lncRNA downstream 44848 34865525 ~ 34865745 (-) True G73336
TU91614 lncRNA downstream 72650 34837633 ~ 34837943 (-) True G73335
TU91609 lncRNA downstream 130003 34780122 ~ 34780590 (-) True G73330
TU91598 lncRNA downstream 307437 34569550 ~ 34603156 (-) True G73319
TU91588 lncRNA downstream 447268 34462489 ~ 34463325 (-) True G73309
TU91651 lncRNA upstream 291882 35223528 ~ 35223860 (-) True G73365
TU91652 lncRNA upstream 302074 35233720 ~ 35234115 (-) True G73366
TU91659 lncRNA upstream 320248 35251894 ~ 35252734 (-) True G73373
TU91665 lncRNA upstream 325820 35257466 ~ 35258943 (-) True G73378
TU91668 lncRNA upstream 336106 35267752 ~ 35268117 (-) True G73381
AMCG00014828 mRNA downstream 345391 34564486 ~ 34565202 (-) True AMCG00014828
AMCG00014826 mRNA downstream 1476211 33127678 ~ 33434382 (-) True AMCG00014826
AMCG00014825 mRNA downstream 1791265 33070806 ~ 33119328 (-) False AMCG00014825
AMCG00014824 mRNA downstream 2104300 32795005 ~ 32806293 (-) False AMCG00014824
AMCG00014823 mRNA downstream 2117168 32791881 ~ 32793425 (-) True AMCG00014823
AMCG00014830 mRNA upstream 11329 34942975 ~ 34960249 (-) True AMCG00014830
AMCG00014832 mRNA upstream 241223 35172869 ~ 35180639 (-) True AMCG00014832
AMCG00014839 mRNA upstream 650069 35581715 ~ 35592456 (-) False AMCG00014839
AMCG00014838 mRNA upstream 703341 35634987 ~ 35688097 (-) True AMCG00014838
AMCG00014841 mRNA upstream 810888 35742534 ~ 35767390 (-) True AMCG00014841
TU91607 other downstream 140614 34769583 ~ 34769979 (-) True G73328
TU91480 other downstream 2104298 32801858 ~ 32806295 (-) True AMCG00014824
TU91374 other downstream 2291444 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 2295787 32597462 ~ 32614806 (-) True G73127
TU91283 other downstream 2647166 32263167 ~ 32263427 (-) True G73047
TU91914 other upstream 648980 35580626 ~ 35608677 (-) True AMCG00014839
TU91940 other upstream 1169712 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 1322128 36253774 ~ 36254187 (-) True G73612
TU92007 other upstream 1441505 36373151 ~ 36393493 (-) True AMCG00014845
TU92209 other upstream 2393374 37325020 ~ 37325307 (-) True G73833

Expression Profile