RNA id: AMCG00014832


Basic Information

Item Value
RNA id AMCG00014832
length 2795
RNA type mRNA
GC content 0.36
exon number 4
gene id AMCG00014832
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 35172869 ~ 35180639 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACATCACTGCATCTATTTTCATTGCCTGTTTAATTCTTCTTGACAGTTCTTTGGTGAATATGAATCACCATGGACACAATCATTAGgcaattatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgataataaaaataataatttttcattACAGTGTTTGGTAAAGCTGGAAGTCTAACTCATATTCAAACAATCACTGGAATCATCAACCAATCAGCTGTTCTTCCCTGTAGTTACAAGACAGACCAACCTTTTAACTTAACTAAACTACGGATTTACTGGCAAATCTCACACATTGTGTCagtacatgttttcaatcaTGGGCAAGTGGATTTTGAGCACCAGGTCAAGGAGTACGAAAATAGAACTAGCTTTTTCCTGGAGGAATTAACAAATGGCAATTTTTCTCTGAGGATATCTCCAGTGAAAttcaaagacaaatcaaaacCCAATGAGAAGTATGATTTatactttgaaaatgaaaatggggGCATGACTCATCATTGCGCCATTGAATTCCATGTTGCAGCAAGTTTCAATGAAcctgtattaaatatatctgcttGTGAAAATATAGCAGAAGGAATTAAAGCAATATGTACTGCCCAAGGAGGGTATCCGGAACCAAGAGTTAACTGGACTGTGCAGGGGGGCCTACTAGATCCAAAGAAAATCAAGACAAATTTCTCACAAGATCCAAAGAGTGGAGTGATTTTCGTAACCAGTATTGCTGTGATAACCAACATATCAGAACAAGGGACTGTGAGGTGTTCCATAATCAATGAAAAACTGGGAGAGATCAAAACATCACCTACTGAAAAATgtaaCATTGAAAATCACCGCAAAAAACGTGATGTGCCTTCGATCATTGGTGTTGTTTCTGTGCTTTCATTTCTGGGACTTATAGCTTTAATCATATACTGCAAGACAAggACCTCGATGACTGCGATGCAAGAGACAGAACAATCCCCAAATGCAGGAATAGTTGAATTAGTGAACAATCCGGCCATGGAAACTCATGCATTGATGACATGATTCCCAAACTGTGCTAGTCCTTTTTACaaagttaatgaaaaaaaaggaaacaagaaaagaaaacaagataattgtttgctttttagttATTGAAAGGGTGCTTCACATGATTCCAGTTTACCAGTGTAAAGGATACAGGAATATATGTTATCAATATTGGGCCTACTGACAAAGTGGAGCCATTTGGATAGTTTCTCATCTCAGTTTccaaaaaaaaggtaattgagaacagtacatttacatgCTGTTATTTACCTTGAAAAGGGGCAGCATGGAATCAGACTTCAGGGACAATGAAAAGAATGCCAGTGGAGGTATATTAGACACTAGGCATTCTCctctataataaatataatataatgtgacCAGTTGAAGAAAATACCTTACTGAGGAGGTAACGGACTTCAAAAAAAGAACCTCAAAACGCTAGAAAAGCATAAAGAAAGACTTGTTTAGCCTGCCTTGTAGAATGTCAGAGTGGAAAATACCTTGGGGCTGGCAGGGAATTTTACTTGATGAgctgaacagaaacaaacaaaaacaacttttctGGTCAGTTCTTGAAAGCTCAAGTAGCAATTCACTCAAAGTGTAATACTTGAGGATGACAGTTTGTTTGAAAGGCAGAAATCTAATAATATCTATTAATACTGAACACAACTTGTAGTGGAAAAACATTGGTCTCCTACTGACATACTCATATATTAGACATTATTTAATCAGACCTGACTAAACCACTTCAAGCTctactgtgaaatgtaaaattaactcATTGATTAAAAAAGTACTCAGTTCTCAGCATTGTAAGCTAACACCACCCCCTACAGACCTGTACAATATAGCcctgtatatataacaaaaccTGTTCTCTTCTCATAAAAAGTATCAAAATtgcaataatgtatttgattaattaatatataaccaatttgttaatataaaaaaatatatcaaagttCTTCAATTTTCTTGAAACGTTCCAGACAGTCACTCATGGGGCTGTGACTTAGTGAGAGCACTGGTCTGTATCAATGTGtcaatgtgtaaaatgtggaaatgtttatcaatacactttttattattattatttgtgtatgtatattatggAGTCCTGAACTATATGCTGTTTGGACCCTGTAGCCATGGTTTGAATCCTGGCTATGATATAGCCAACAGTGAAAGCCAGGGCTTCCAAAATTTACAGTTTAGAGGGAAACAGTCACCCCTGTGGCttacaatatacattataacatCTTATAATGCAAAATTTAAATATAGGGtattaaagaaagagagaaaaaaatatttaaataactgatgTTGTAATATTGATATTTGTGAATAAGCATGCAATGTTGATGTTtggtatattttcttttcattgtggGATTGAAACCCTCTACATATGGTAAATACCTACCTCTTATTTAAgagtataaatacaaatattttttaaagaaaataaaataaaccctaCTTTTTcccatgtttatatattttctaatatatttttgatattgTAAGGATCCGGGACTGGGGTGGTCATGTGTGGTATGTGtagatgtgttttgtgttcattctGTTATGTTAATGTAACTGTTTAGTTACTTCCggggtcaggggttggcccCCCGCGGGAACACAGGGGGTgccgtgattgggggagccagtcacggggtAAGAACTAATAAAGAGGGGTGCCCTGGTTCCCACGGCATAGTTGCAGTTGTTGTAGAGGTGAGAGAGG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91615 lncRNA downstream 307124 34865525 ~ 34865745 (-) True G73336
TU91614 lncRNA downstream 334926 34837633 ~ 34837943 (-) True G73335
TU91609 lncRNA downstream 392279 34780122 ~ 34780590 (-) True G73330
TU91598 lncRNA downstream 569713 34569550 ~ 34603156 (-) True G73319
TU91588 lncRNA downstream 709544 34462489 ~ 34463325 (-) True G73309
TU91651 lncRNA upstream 42889 35223528 ~ 35223860 (-) True G73365
TU91652 lncRNA upstream 53081 35233720 ~ 35234115 (-) True G73366
TU91659 lncRNA upstream 71255 35251894 ~ 35252734 (-) True G73373
TU91665 lncRNA upstream 76827 35257466 ~ 35258943 (-) True G73378
TU91668 lncRNA upstream 87113 35267752 ~ 35268117 (-) True G73381
AMCG00014830 mRNA downstream 212620 34942975 ~ 34960249 (-) True AMCG00014830
AMCG00014829 mRNA downstream 241223 34910593 ~ 34931646 (-) True AMCG00014829
AMCG00014828 mRNA downstream 607667 34564486 ~ 34565202 (-) True AMCG00014828
AMCG00014826 mRNA downstream 1738487 33127678 ~ 33434382 (-) True AMCG00014826
AMCG00014825 mRNA downstream 2053541 33070806 ~ 33119328 (-) False AMCG00014825
AMCG00014839 mRNA upstream 401076 35581715 ~ 35592456 (-) False AMCG00014839
AMCG00014838 mRNA upstream 454348 35634987 ~ 35688097 (-) True AMCG00014838
AMCG00014841 mRNA upstream 561895 35742534 ~ 35767390 (-) True AMCG00014841
AMCG00014842 mRNA upstream 611709 35792348 ~ 35814438 (-) True AMCG00014842
AMCG00014840 mRNA upstream 797567 35978206 ~ 35986568 (-) True AMCG00014840
TU91607 other downstream 402890 34769583 ~ 34769979 (-) True G73328
TU91480 other downstream 2366574 32801858 ~ 32806295 (-) True AMCG00014824
TU91374 other downstream 2553720 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 2558063 32597462 ~ 32614806 (-) True G73127
TU91283 other downstream 2909442 32263167 ~ 32263427 (-) True G73047
TU91914 other upstream 399987 35580626 ~ 35608677 (-) True AMCG00014839
TU91940 other upstream 920719 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 1073135 36253774 ~ 36254187 (-) True G73612
TU92007 other upstream 1192512 36373151 ~ 36393493 (-) True AMCG00014845
TU92209 other upstream 2144381 37325020 ~ 37325307 (-) True G73833

Expression Profile