RNA id: AMCG00014835


Basic Information

Item Value
RNA id AMCG00014835
length 1986
RNA type mRNA
GC content 0.37
exon number 6
gene id AMCG00014835
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 35370984 ~ 35382903 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttttgtgcGTTTATATGGTTAATAACCTGTAGgttctttgtgtatttttgtctcagtgtactctttTCTGTACTGCAGGCCAATGTGAGCTCCCATCTCCTACTAATGTCACCATTATCTCCCTCAACCTGGAGCATGTCCTCAAATGGGATCCAGGTCCTGGTTCACCAACTGGAACACAATACAGAgttgaatatttacatttccaAGTTCAAGCTTTCACAGAGTTAGAACAGTCCACCTGGTCGAAGTCAAGCTTTTTCCAGCCTATTTCAAACACAATCCTGGGTCCTCCTGAAGTAACTGTGTCTGGCTGTGGCGATTGCCTTCATCTACAGGTGAAGCCCCCAAAGGGAAAGAGAATGGACCACTTCTTAGCCTACTACGAGTCTGAATACATTTGCGAAGTCCTGAGTGCCACAGATGGAAGAAAGTTCACCCTGAGAATTTCAGGACAAAGAGTTATTGAATATTTGAAACCTGCCACAGAGTACTGTGTCACTGTGAAAATGTACATAGGAATCAATCAGCATGCTATTCTTTCTAATCCACACTGTGTTTTCACCAGCTTACCTCATCTAAACAAAGtccCTGTTGTACTAGGCCTGTTTTGCTTGGTCTTCTTGCTGAGTGTTATGGTCTGGGGATTCCTGTTCTACGGTTACATTCTGCGCTCTCTTTAAAAACATCTCCCAAATTCTTTGATGTCTTTGTCTTTTGATGCAAGCACTCAACAGGTCAACACTCCAGAAATGGATTGCTCAGTCAATTTCCTTAAATTAGACATGGAAGGCAAAAGGTGTAACTGGTACCACTTGAACACCAGTGTCAAAGAGGAGAGTGTAAGAGAAGAAGATAAAGGCTATGGGCACATTACATGCAATGCTAGTCCggatacacacactgactttCAACAATAGTCTGAACCTGTCTGCCCCAAACTTGAGCTGGTCTGTGCGTGGGGTTTAAAAAACAGGAcctcaaacaaaatcaaaaggaaTAAAGAAGGTTCTGTAAAGGAAGATATTATTGATTTGTTActtgttcttcattttattttagtttctgccCTATACCAAGTGAGTGGTTATCCACTGTGCAATTCTAAATAATCAACTCTttggttatttttgtattgtttttcttttcttttattcactTTTTACCTTCCAATGTTGCACCCTGGCATCACTGACCTACAATGATCTTGTTTCATGATAACATGCCTCAAGTTCAGTTTTCTCTGAACATGAGAGTCTTGAAAAAATCCATGTATTTTTTGTCTGaacttttttcttctgtccttcaaatataaaaaagctaaCTTTGTAACTAAAACAATTTAAGTAATGATAGATTCATGACCTAGTTCAGTCCAGTTCAAAAGCATGGTAAATGCTTTTACGTGGTAAattttacaaatgcattgttgaaaatgacatttattgCATCTTGATATACAACATGGTTGTTGAATCAATCTGTCAgcattatataaacacatttaatttagtttaaacaATGTGTTTCACGTGAATGTGATTTATGTTCCAAAATGGTTGAGGACATCCTTGGTTAACATTGTCATTGACAGCAAAGGGTATTCAAATGGGATTATATAGACCCACTTACCAAATAGTTCATAGATCATTATTGCCTCTCACCATGGCACTGAACAATCGCTTACTTAATAGGTTAATTGGGCTAAAGATGAGCACAGTTAAGAGAATGTGGACATAACAGAAGACTGACTGTTAGATCAGTCTTGCGAATATAAAATCAGTTTATATTACTGTGATATTGAGCTGAATCGAATTCAGattatgctttttgtttgttaaattctCTGCAAAACGGTGATACAACAAAATGCAATACTCTTAACTGCTCAGTGttgtgatgtttttatataatttatataaaatactgaaatcataacATCAATGCTGTATTATATAAcgaagatataataataataataataa

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91667 lncRNA upstream 102903 35267644 ~ 35268081 (+) True G73380
TU91660 lncRNA upstream 114869 35253869 ~ 35256115 (+) True G73374
TU91642 lncRNA upstream 201778 35168949 ~ 35169206 (+) True G73356
TU91640 lncRNA upstream 292088 35078659 ~ 35078896 (+) True G73354
TU91606 lncRNA upstream 601026 34769583 ~ 34769958 (+) True G73327
TU91689 lncRNA downstream 7731 35390634 ~ 35412587 (+) True AMCG00014836
TU91721 lncRNA downstream 89157 35472060 ~ 35476459 (+) True G73427
TU91732 lncRNA downstream 114294 35497197 ~ 35502434 (+) True G73431
TU91765 lncRNA downstream 288875 35671778 ~ 35672050 (+) True G73462
TU91767 lncRNA downstream 292070 35674973 ~ 35684158 (+) True G73463
AMCG00014833 mRNA upstream 50002 35027857 ~ 35320982 (+) True AMCG00014833
AMCG00014831 mRNA upstream 439124 34691085 ~ 34931860 (+) True AMCG00014831
AMCG00014827 mRNA upstream 1592736 33697523 ~ 33778248 (+) True AMCG00014827
AMCG00014822 mRNA upstream 2602005 32758965 ~ 32768979 (+) True AMCG00014822
AMCG00014821 mRNA upstream 2614847 32734868 ~ 32756137 (+) True AMCG00014821
AMCG00014836 mRNA downstream 11407 35394310 ~ 35412072 (+) False AMCG00014836
AMCG00014834 mRNA downstream 81098 35464001 ~ 35474369 (+) True AMCG00014834
AMCG00014837 mRNA downstream 168254 35551157 ~ 35551807 (+) True AMCG00014837
AMCG00014848 mRNA downstream 912813 36295716 ~ 36297723 (+) True AMCG00014848
AMCG00014850 mRNA downstream 1234762 36617665 ~ 36733253 (+) True AMCG00014850
TU91622 other upstream 410537 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 590394 34780122 ~ 34780590 (+) True G73329
TU91569 other upstream 1131584 34238934 ~ 34239400 (+) True G73292
TU91511 other upstream 2004884 33364755 ~ 33366100 (+) True G73244
TU91344 other upstream 2809495 32542510 ~ 32561489 (+) True G73103
TU91690 other downstream 7731 35390634 ~ 35394649 (+) False AMCG00014836
TU92227 other downstream 2135205 37518108 ~ 37518406 (+) True G73850
TU92541 other downstream 3049471 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 3427790 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 3953365 39336268 ~ 39475819 (+) True G74348

Expression Profile