RNA id: TU91689



Basic Information


Item Value
RNA id TU91689
length 906
lncRNA type sense_over
GC content 0.40
exon number 3
gene id AMCG00014836
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 35390634 ~ 35412587 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCTTACAGTAAACATCCTGTGGAACTGTAGTCCTAACAAGAGACGTAATTAGCCACACTTTTGTCAAAATGGGGTcctttaaaatctgttttatcGAAAGCTGCTGTATATTGCAAGtGGTGCTTGCATCTTTACCTCCTCCAAGAAATGTAAGAGTGCATTCAATAAACCTTGGAGCCACACTACAATGGGACTATGAGGCTTCTGCAACCAATGTCACCTATACTGCAACATTCATATACAATATTTGACAGATCCTCCACACTCCTATGTGTTCTTGGCCATGCAGAATCCAAATGAACCAGAGGAGATGTGCAACGAGATCAGCATTGTGTGTGAAGAGTCAGAGACCATTGAGATGGGAGAGAACACTCAGAAAAGTGGAGTGGTCTCGGGTGAAGAGTTTCCTCAGGATCAGAAagaatgcatacaaatataatttgggTGATAAAGAACACAGCATTTTCTCATATTAATGGGACTTCAGGACCAATTCCCAGACTTATGCCAAATCTGGTTCGGCCACTGTGAAAGCATCTGTATAATTGAGCTAGTTTTTGACACAATATAAATAGATACTCTGACAAATGCTTCTATTATATTTATCCTGGCCTCAGTTGTTGGTGTTTGCTTTTGCTGTGTCATCAAGATGTGCTGTGCAACAGTTTCCAGCTTGTTTCCAAGGAGGATCTTCCATCAGACATGgattatattcatatttgcCAAAGGATGTTCTTTAGTCCTACCTACCTATGGATTCAGcatattctttaaaaagcaaCCTTTTCTCATGTGACATATTCAGTTTTGACGTGGAACTAGAAAATGGGAAATATCCCACCCCGCTACATCaacaatatatacactcacctaaaggattattaggaacacctgttcaatttctca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU91667 lncRNA upstream 122553 35267644 ~ 35268081 (+) True G73380
TU91660 lncRNA upstream 134519 35253869 ~ 35256115 (+) True G73374
TU91642 lncRNA upstream 221428 35168949 ~ 35169206 (+) True G73356
TU91640 lncRNA upstream 311738 35078659 ~ 35078896 (+) True G73354
TU91606 lncRNA upstream 620676 34769583 ~ 34769958 (+) True G73327
TU91721 lncRNA downstream 59473 35472060 ~ 35476459 (+) True G73427
TU91732 lncRNA downstream 84610 35497197 ~ 35502434 (+) True G73431
TU91765 lncRNA downstream 259191 35671778 ~ 35672050 (+) True G73462
TU91767 lncRNA downstream 262386 35674973 ~ 35684158 (+) True G73463
TU91776 lncRNA downstream 327948 35740535 ~ 35742847 (+) True G73471
AMCG00014835 mRNA upstream 7731 35370984 ~ 35382903 (+) True AMCG00014835
AMCG00014833 mRNA upstream 69652 35027857 ~ 35320982 (+) True AMCG00014833
AMCG00014831 mRNA upstream 458774 34691085 ~ 34931860 (+) True AMCG00014831
AMCG00014827 mRNA upstream 1612386 33697523 ~ 33778248 (+) True AMCG00014827
AMCG00014822 mRNA upstream 2621655 32758965 ~ 32768979 (+) True AMCG00014822
AMCG00014834 mRNA downstream 51414 35464001 ~ 35474369 (+) True AMCG00014834
AMCG00014837 mRNA downstream 138570 35551157 ~ 35551807 (+) True AMCG00014837
AMCG00014848 mRNA downstream 883129 36295716 ~ 36297723 (+) True AMCG00014848
AMCG00014850 mRNA downstream 1205078 36617665 ~ 36733253 (+) True AMCG00014850
AMCG00014852 mRNA downstream 1500813 36913400 ~ 36914503 (+) True AMCG00014852
TU91622 other upstream 430187 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 610044 34780122 ~ 34780590 (+) True G73329
TU91569 other upstream 1151234 34238934 ~ 34239400 (+) True G73292
TU91511 other upstream 2024534 33364755 ~ 33366100 (+) True G73244
TU91344 other upstream 2829145 32542510 ~ 32561489 (+) True G73103
TU92227 other downstream 2105521 37518108 ~ 37518406 (+) True G73850
TU92541 other downstream 3019787 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 3398106 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 3923681 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 4194300 39606887 ~ 39621186 (+) True AMCG00014913

Expression Profile