RNA id: AMCG00014842


Basic Information

Item Value
RNA id AMCG00014842
length 1074
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00014842
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 35792348 ~ 35814438 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACACCGAGATTTACAAGGCCTCAGTTAAGGAGGACATCATCCGATGGCATAATACGCTCAAGACTTACAACACGGCCGATTGGCTGATTGTGGTGATTGAGAGTGATgccaagaagaagaacaagacaAACATCCTCCCTCGGACTTCCATCGTAGACAAAATAAGGAATGATTTCTGCAACAAACAGAGTGACAGGTATTGTGCTATactcattGAATCTTGGAGTGCATTCCTCACTAAACTGCGGACGCTTTTGCTGATGTCCTTCACTAAGAACTTGGGCAAATTTGAGGATGACATGAGAACTCTACGCGAGAAACTTCGATGTGCAGCctattttgaaatgcagttgTCATTTAGAATTGATACGCACAACTTCATACACACTTTAGATGCTCTATATTTAATGTTGCCATCTAAACTATTATCTTTTTCCTCATTATCTTTTGAAAAGCCAAATGCAAACAACATGTCAGCCATGCGTCAGTTTGAAGATGCCCTAGTCCAGTATGATGAACTGGATGCTCTCTTCACTCAATACGTTGTTAATTTTGGGGCCGGAGATGGTGCCAACTGGCTTAGTTCATTTTGTCAGCCAGTACGCAGCTGGAATGGACTGATACTGCGAAAGCCTATagacatggaaaagagagaCCTGATCCAACGCAGCCAGGCGAGTTTGCTTGACCTGCGAAGCTACCTGTTCTCCCGTCAGTGCACCCTGCTCATATTCCTGCAGCGCCCTTGGGAGGTCACCCAACGTGCCCTGGAACTCCTACACAATTGTGTGCAGGAGCTGCGTCTGCTTGAGGTGTCGGTGCTACAGGGAGCTCTGCACTGTTGGGTCTTCTTGAGTTGTCTGGAGGTCCTACAGAGAATAGAGGGCTGCTGTGACCGAGTGCAGCTGGATTCTAACTCGTCACACACTGTTGGATTGTGGACCTATGCTACTGAGAAGTTGAAATGTTTGGGTTACCTGTGTGGGCTGGTTTCAGAAAATGGACCGAATTCTGAGGACTTGAACCGAACTGTGGACATCCTGGCAGGATTGGGAGCAGAGAGACCCGAAACA

Function

GO: NA

KEGG:

id description
K20307 TRAPPC10, TRS130; trafficking protein particle complex subunit 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91882 lncRNA downstream 327683 35391184 ~ 35464665 (-) True G73562
TU91864 lncRNA downstream 369213 35340673 ~ 35423135 (-) True G73548
TU91844 lncRNA downstream 431971 35275736 ~ 35360377 (-) True G73533
TU91845 lncRNA downstream 431971 35275736 ~ 35360377 (-) False G73533
TU91674 lncRNA downstream 517610 35273610 ~ 35274738 (-) True G73385
TU91945 lncRNA upstream 241558 36055996 ~ 36057458 (-) True G73606
TU91948 lncRNA upstream 379610 36194048 ~ 36194250 (-) True G73609
TU92025 lncRNA upstream 659805 36474243 ~ 36475948 (-) True G73667
TU92063 lncRNA upstream 831621 36646059 ~ 36652043 (-) True G73704
TU92083 lncRNA upstream 874919 36689357 ~ 36730561 (-) True G73722
AMCG00014841 mRNA downstream 24958 35742534 ~ 35767390 (-) True AMCG00014841
AMCG00014838 mRNA downstream 104251 35634987 ~ 35688097 (-) True AMCG00014838
AMCG00014839 mRNA downstream 199892 35581715 ~ 35592456 (-) False AMCG00014839
AMCG00014832 mRNA downstream 611709 35172869 ~ 35180639 (-) True AMCG00014832
AMCG00014830 mRNA downstream 832099 34942975 ~ 34960249 (-) True AMCG00014830
AMCG00014840 mRNA upstream 163768 35978206 ~ 35986568 (-) True AMCG00014840
AMCG00014843 mRNA upstream 248181 36062619 ~ 36073308 (-) True AMCG00014843
AMCG00014844 mRNA upstream 359407 36173845 ~ 36332481 (-) True AMCG00014844
AMCG00014845 mRNA upstream 559099 36373537 ~ 36390780 (-) False AMCG00014845
AMCG00014847 mRNA upstream 650016 36464454 ~ 36526810 (-) True AMCG00014847
TU91914 other downstream 183671 35580626 ~ 35608677 (-) True AMCG00014839
TU91607 other downstream 1022369 34769583 ~ 34769979 (-) True G73328
TU91480 other downstream 2986053 32801858 ~ 32806295 (-) True AMCG00014824
TU91374 other downstream 3173199 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 3177542 32597462 ~ 32614806 (-) True G73127
TU91940 other upstream 286920 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 439336 36253774 ~ 36254187 (-) True G73612
TU92007 other upstream 558713 36373151 ~ 36393493 (-) True AMCG00014845
TU92209 other upstream 1510582 37325020 ~ 37325307 (-) True G73833
TU92296 other upstream 1964895 37779333 ~ 37783575 (-) True G73916

Expression Profile