Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00014844 |
| length | 1404 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 12 |
| gene id | AMCG00014844 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030128.1 |
| NCBI id | CM030128.1 |
| chromosome length | 42883965 |
| location | 36173845 ~ 36332481 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K24891 | PKNOX; homeobox protein PKNOX |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU91945 | lncRNA | downstream | 116387 | 36055996 ~ 36057458 (-) | True | G73606 |
| TU91890 | lncRNA | downstream | 330854 | 35434969 ~ 35842991 (-) | True | G73568 |
| TU91882 | lncRNA | downstream | 709180 | 35391184 ~ 35464665 (-) | True | G73562 |
| TU91864 | lncRNA | downstream | 750710 | 35340673 ~ 35423135 (-) | True | G73548 |
| TU91845 | lncRNA | downstream | 813468 | 35275736 ~ 35360377 (-) | False | G73533 |
| TU92025 | lncRNA | upstream | 141762 | 36474243 ~ 36475948 (-) | True | G73667 |
| TU92063 | lncRNA | upstream | 313578 | 36646059 ~ 36652043 (-) | True | G73704 |
| TU92083 | lncRNA | upstream | 356876 | 36689357 ~ 36730561 (-) | True | G73722 |
| TU92141 | lncRNA | upstream | 683469 | 37015950 ~ 37016173 (-) | True | G73776 |
| TU92178 | lncRNA | upstream | 840449 | 37172930 ~ 37173171 (-) | True | G73803 |
| AMCG00014843 | mRNA | downstream | 100537 | 36062619 ~ 36073308 (-) | True | AMCG00014843 |
| AMCG00014840 | mRNA | downstream | 187277 | 35978206 ~ 35986568 (-) | True | AMCG00014840 |
| AMCG00014842 | mRNA | downstream | 359407 | 35792348 ~ 35814438 (-) | True | AMCG00014842 |
| AMCG00014841 | mRNA | downstream | 406455 | 35742534 ~ 35767390 (-) | True | AMCG00014841 |
| AMCG00014838 | mRNA | downstream | 485748 | 35634987 ~ 35688097 (-) | True | AMCG00014838 |
| AMCG00014845 | mRNA | upstream | 41056 | 36373537 ~ 36390780 (-) | False | AMCG00014845 |
| AMCG00014847 | mRNA | upstream | 131973 | 36464454 ~ 36526810 (-) | True | AMCG00014847 |
| AMCG00014846 | mRNA | upstream | 207337 | 36539818 ~ 36570308 (-) | True | AMCG00014846 |
| AMCG00014849 | mRNA | upstream | 470751 | 36803232 ~ 36804839 (-) | True | AMCG00014849 |
| AMCG00014851 | mRNA | upstream | 598526 | 36931007 ~ 36944739 (-) | True | AMCG00014851 |
| TU91914 | other | downstream | 565168 | 35580626 ~ 35608677 (-) | True | AMCG00014839 |
| TU91607 | other | downstream | 1403866 | 34769583 ~ 34769979 (-) | True | G73328 |
| TU91480 | other | downstream | 3367550 | 32801858 ~ 32806295 (-) | True | AMCG00014824 |
| TU91374 | other | downstream | 3554696 | 32597462 ~ 32619149 (-) | False | G73127 |
| TU91373 | other | downstream | 3559039 | 32597462 ~ 32614806 (-) | True | G73127 |
| TU92007 | other | upstream | 40670 | 36373151 ~ 36393493 (-) | True | AMCG00014845 |
| TU92209 | other | upstream | 992539 | 37325020 ~ 37325307 (-) | True | G73833 |
| TU92296 | other | upstream | 1446852 | 37779333 ~ 37783575 (-) | True | G73916 |
| TU92499 | other | upstream | 2010841 | 38343322 ~ 38350291 (-) | False | G74087 |
| TU92533 | other | upstream | 2079679 | 38412160 ~ 38413231 (-) | True | G74107 |
