RNA id: AMCG00014846


Basic Information

Item Value
RNA id AMCG00014846
length 1312
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00014846
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 36539818 ~ 36570308 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGATGATATAAAATGTCAGATGTGGGATCCGACGAATTTGAAGAAGAGCAAGGACACTACCTCGGGaacctaggactCACCCTCGAGcatgcgctctcctacactcagcacgtcaccatgctgacacgcatctgcagattcttcctgagcaacatacaccgaatccgacccttcctcaccaactactcgactcagctgctcgtccagtccctggtcctctcccgcctggactaatGCAACACCCTCCTGGCCGGCATgtctgcaactactacccgcccactccagctcatccagaactttGCTGCTCGCCTGGAATATGAAGGGGACCGCAATGCAGCTGATGAGAGACATGGCATAGGGAAAGCTGTTTTGCCTAATGGGGATACCTTTCAAGGACaatatgaaaatggaaaaaggaaTGGACAGGGAACCTACAGATTCAAAAGTGGAGCTCGGTACACTGGTGAATATTATATGAACAAAAAGCATGGTCAGGGCACATTCTACTACCCTGATGGATCAAAGTATGAAGGTGGCTGGGCTGATGATCTGCGGCAAGGCCATGGagtgtacacatacataaacgGAGACACGTATGACGGGGAGTGGATGAATCACCAAAGGCATGGGCAgggtgtgtatacatacatggATACAGGATCAAAGTATGTAGGCACTTGGGCAATGGGCCAGCAGGAGGGAGCTGgagaatatatatatctcaaCCACAGATTTCAAGGAAATTTCCTCAACAGCAAGcCTTTTGGACCAGGAAAATACATCTTTGAAATTGAATGTGAGCAACAAGGGGACTTCCTTCAAGTGGAACAGGACAAAGGTGATGCTGAAGATGCAGATCCCCTTAGTGTCACTGTGCTGAAGTGGAAGGCAGAAAAAGTGACAGGCATGACCCTTTGGACTCCAGCTGAGgagaaaaaacagcagacagcAGCACCTGGGAAGATGGGGGAGGATGAAGTTCTGTCCACTAAGAGCCAGCCTGTGATTacagaggagaaggagaagaaagaacTTGTACCTGAACCAGAGTCAAAGCAAGAGCCAGAGTCACAGCCAGAGCCAGAGGAGACTCAGACCACTGCTACTGGAGTTGAGGACAAGGAGTCTATGAATGCATAAAAACACCAAACCAAACACCGAACATGCCTTGATTGATTATAGACAATCAAATTGCAATTTTATATCCTAAAATAATGAGATTTTAGCATACAAGTATTCTGTTTTGTcataacatttataattaacatttctaatttagaaatagtttaaatgtccCGGTTTTTAGCTTTC

Function

GO: NA

KEGG:

id description
K19755 RSPH1; radial spoke head protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92025 lncRNA downstream 63870 36474243 ~ 36475948 (-) True G73667
TU91948 lncRNA downstream 345568 36194048 ~ 36194250 (-) True G73609
TU91945 lncRNA downstream 482360 36055996 ~ 36057458 (-) True G73606
TU91890 lncRNA downstream 696827 35434969 ~ 35842991 (-) True G73568
TU91882 lncRNA downstream 1075153 35391184 ~ 35464665 (-) True G73562
TU92063 lncRNA upstream 75751 36646059 ~ 36652043 (-) True G73704
TU92083 lncRNA upstream 119049 36689357 ~ 36730561 (-) True G73722
TU92141 lncRNA upstream 445642 37015950 ~ 37016173 (-) True G73776
TU92178 lncRNA upstream 602622 37172930 ~ 37173171 (-) True G73803
TU92228 lncRNA upstream 947735 37518043 ~ 37518331 (-) True G73851
AMCG00014847 mRNA downstream 13008 36464454 ~ 36526810 (-) True AMCG00014847
AMCG00014845 mRNA downstream 149038 36373537 ~ 36390780 (-) False AMCG00014845
AMCG00014844 mRNA downstream 207337 36173845 ~ 36332481 (-) True AMCG00014844
AMCG00014843 mRNA downstream 466510 36062619 ~ 36073308 (-) True AMCG00014843
AMCG00014840 mRNA downstream 553250 35978206 ~ 35986568 (-) True AMCG00014840
AMCG00014849 mRNA upstream 232924 36803232 ~ 36804839 (-) True AMCG00014849
AMCG00014851 mRNA upstream 360699 36931007 ~ 36944739 (-) True AMCG00014851
AMCG00014855 mRNA upstream 473902 37044210 ~ 37047479 (-) True AMCG00014855
AMCG00014856 mRNA upstream 498563 37068871 ~ 37073768 (-) True AMCG00014856
AMCG00014854 mRNA upstream 509849 37080157 ~ 37115666 (-) True AMCG00014854
TU92007 other downstream 146325 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 285631 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 357467 36101358 ~ 36182351 (-) True G73604
TU91914 other downstream 931141 35580626 ~ 35608677 (-) True AMCG00014839
TU91607 other downstream 1769839 34769583 ~ 34769979 (-) True G73328
TU92209 other upstream 754712 37325020 ~ 37325307 (-) True G73833
TU92296 other upstream 1209025 37779333 ~ 37783575 (-) True G73916
TU92499 other upstream 1773014 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 1841852 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 1861955 38432263 ~ 38432875 (-) True G74115

Expression Profile