RNA id: AMCG00014853


Basic Information

Item Value
RNA id AMCG00014853
length 2458
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00014853
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37000630 ~ 37030062 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTTCCCCCAGACTTCACACCCTCCGAGAAATCGGAGCTCCAATCTATCAGAATGCACAAAAGTGAATTACTCGAGGATATCCAGAAGTTGAAGTTGGAGATCGCTAACGTCATTGCTGATATTGAAGACTttgagcaggaggaagagaaCAAAACTATTCAGAGGGGAAAACAGGTAACAAGTGGAAAGAAGAAGTTCAACATGGATCCGAAAAAGGGCATGCAGTATCTTATTGACAATAATCTACTTGTTTGGGAACCACATGCAGTGGCTGACTTCCTGTACAGAGAGGAAGGGCTGAACAAGACGGCCATAGGGGACTTCCTGGGGGAGAGAGAAGAGATGCAcctcaacattttaaaagcctttgTGGATCTTCATGAGTTTGCAGACCTGAATCTTGTCCAAGCACTTAGGCAGTTTCTCTGGAGTTTCCGGCTACCTGGAGAAGCCCAGAAGATTGACCGGATGATGGAAGCCTTTGCCACGCGCTACTGCGACTGCAACCCCAGCGTCTTCCAGTCCACCGACACTTGCTACATCCTGTCCTTCGCCATCATCATGCTCAACACCAGTTTACACAACCACAACGTCAAAGACAAGACCACCTTGGAGAGATTCATCAGCATGAACAGGGGCATCAACAATGGGGGAGACCTTCCCAGTGACTTACTCATGGATAAGGAGCCCAGAGGGATCATTCCCCTTGAAAACCTGTGTGTTAGAGAGGTTGTGGACCCTCGCAAGCCAtaCTGCCTGGAGCTCTACAACCCCAACAGCAAGGGTCAGAAGATCAAGGCTTGCAAGACAGAGACGGATGGCCGTGTGGTTGTGGGGAAACACCAGTCTTACAAAATCTCCGCCTCCACCGCTGACGAGAGGGATGATTGGATCAAATCTATCCGGGCCAGCATCACCAAGGATCCTTTCTATGACCTCGTCTCAGTTCGGAAGAAGAAAGTCATCAACCAGGTCCCTGACACTGAAGCAGTAGAACAGAAGAGCATCTGAAATGCCCCGGTAGAGGGTGGCTCCAGTCCTCCACAATCTCTCGCTGGTTTTGGTCTCAACATCTTATTGCTCTGAGGATCACATCTAGCCACTGCTAACTTCAGACTCCCAGGGAATCTGCATGAAAAGCCTtggctgggggggtggggggcagccTGTTCCTGACCCCCACCACTTTTACTATAAGGAAGCAACCAGTTTTCAATCTTGCTCTTCATCTCAGCCGGTGTCCTTTGGTCCTTGTTGACCCTGCAGTCATCCTTTGCATATGGTCGACCCTTCCCTTGGTTTGGAATCCTTAGGTCAATTCTCCCCCCTTAATCTCATTGGTTCTTCTATAATGTTTGGTTCTTCTTTTTGCCTGTTTGTCCGTCTTTGTAGCATTTACACTCTTGTGGTCAGAATTGCTTCTCTTCCTCCCCTGGGATCCTCTGTAAGGCAGCAGTGTTTTATTCACTGTATACCcaaaagagaaacagacagagagatagggAAAGAGGCAGAGCGataaagagagcgagagagaaacagaaacagaaaggcacagagagagagacagagatcagCCTAACTTCATACATTATTGAGTATTGAATCTATCTCTGTTTGATCACTGATTGAAAATACGTGCTGGTGGTGAAAAAACTGTCCCAAATTGGATTGGCAGAATTGGGCCCGGCAATGTTCTTAAGTATCAGCCGTTTCTGTTCCTTCTTCCCCTCAATATCCTGTTCAACTGCAAATGTGAGATACACACTGCCACATAGATACCTTGTTGTGTTCAGGAGATCTGATCTTTAAAAGTGCATTCCAGAGACTGTGACTCAGCTCAGGATAACCATCAATCACCTTCTGCTCCTTGTGCATCACCATGCATTTCAGTATGACCACCCTGATACATATTTCCTATGATATACCACCCCAACCAGTGGGTGGCCGTTGATAACACTTGCTTGTAGTCCCTAGCTAGCCTTGGGCCATTATTCGGCTTACCAAGTAAAACACATAACACAAAGGTAGAATTTGAAGGTGGTCTTGTAGTCATGATGGAAGCAACAGGTtcaatacacatatttatagtCAGGGTATAGTCTAGGGATTGATAGCTTATTTGGGGGCCTCTAAATAAAGCATGATCACAGCCTGATAAACGCAAGATCCACTCAAGATTACacactatataaatatgtagatGAGCTGcattagtaaaatatatattgaaaatgcatttttattaatttgactttGAATGAATTTGACAAAACAGCAGTATGTTACCAAAGacgagaaaacaacaacaccgtACACATTGAAGTTTCACTTGTTTCTCCTGGTGCTTAATTTTAGACACCAAAAACCTCTGCATTCATTCACTCATCTgagtatatacagtgcatccggaaagtattcacagcgcttcactttttccacattttgttatgtta

Function

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG:

id description
K18442 ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92111 lncRNA upstream 58809 36838829 ~ 36941821 (+) True G73748
TU92102 lncRNA upstream 227889 36772485 ~ 36772741 (+) True G73739
TU92048 lncRNA upstream 311565 36654955 ~ 36689065 (+) True G73689
TU91990 lncRNA upstream 500500 36490183 ~ 36500130 (+) True G73641
TU91986 lncRNA upstream 522680 36476608 ~ 36477950 (+) True G73638
TU92162 lncRNA downstream 130926 37160988 ~ 37163326 (+) True G73791
TU92177 lncRNA downstream 142869 37172931 ~ 37173176 (+) True G73802
TU92181 lncRNA downstream 213173 37243235 ~ 37243446 (+) True G73806
TU92204 lncRNA downstream 267615 37297677 ~ 37298128 (+) True G73828
TU92205 lncRNA downstream 269323 37299385 ~ 37299598 (+) True G73829
AMCG00014852 mRNA upstream 86127 36913400 ~ 36914503 (+) True AMCG00014852
AMCG00014850 mRNA upstream 267377 36617665 ~ 36733253 (+) True AMCG00014850
AMCG00014848 mRNA upstream 702907 36295716 ~ 36297723 (+) True AMCG00014848
AMCG00014837 mRNA upstream 1448823 35551157 ~ 35551807 (+) True AMCG00014837
AMCG00014834 mRNA upstream 1526261 35464001 ~ 35474369 (+) True AMCG00014834
AMCG00014862 mRNA downstream 666598 37696660 ~ 37706352 (+) True AMCG00014862
AMCG00014864 mRNA downstream 723733 37753795 ~ 37754523 (+) True AMCG00014864
AMCG00014863 mRNA downstream 724797 37754859 ~ 37755848 (+) True AMCG00014863
AMCG00014870 mRNA downstream 871735 37901797 ~ 37904976 (+) True AMCG00014870
AMCG00014867 mRNA downstream 905529 37935591 ~ 37944752 (+) True AMCG00014867
TU91690 other upstream 1605981 35390634 ~ 35394649 (+) False AMCG00014836
TU91622 other upstream 2040183 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 2220040 34780122 ~ 34780590 (+) True G73329
TU91569 other upstream 2761230 34238934 ~ 34239400 (+) True G73292
TU91511 other upstream 3634530 33364755 ~ 33366100 (+) True G73244
TU92227 other downstream 488046 37518108 ~ 37518406 (+) True G73850
TU92541 other downstream 1402312 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 1780631 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 2306206 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 2576825 39606887 ~ 39621186 (+) True AMCG00014913

Expression Profile