RNA id: AMCG00014857


Basic Information

Item Value
RNA id AMCG00014857
length 3072
RNA type mRNA
GC content 0.60
exon number 17
gene id AMCG00014857
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37323742 ~ 37359709 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGAATACTCCCTGGATCTCCAGAACATCAACCTCTCGGCCATTCGAACAGTAAGAGTCCTGCGGCCTCTCAAAGCCATCAACAGGGTGCCCATGTGGGTGATTGTCTTTTtggtggaggtgggggtggaggcGGAGGTGCCAGAGGATGTGGAGAAGCCCTTCATCTGCTCCCTGGAGGTGGACAATGGCATCATGTCCTGCCAGGATGTCCCTGCCCGCAGGGAGGAGGGGCGTGAGTGCTGCCTGGACAAGGATGACTACCTGCACCGCCTGTCGCTGGGCCTGTCCCCTGAGCCCTTGAGCAATGGCAGTGGTGGGGCgtgggcagggggtgggggtgggggtggtccAGGCTGGGGCCTGTGTGTGAACTGGAACCAGTACTACTCCCGCTGCCACACAGGCCTCACCAACCCACACAAGGGGGCCATCAACTTCGACAACATCGGCTACGCCTGGATTGTAATCTTCCAGGTCATCACTCTGGAGGGCTGGGTGGAGATCATGTACTATGTGATGGACGCTCACTCCTTCTACAACTTTATCTACTTTATCCTGCTCATCATTGTGGGCTCATTCTTCATGATCAATCTGTGCCTGGTGGTGATCGCAACCCAGTTCTCAGAGACCAAGCAGCGGGAGCACCAGCTGATGCAGCAGCAGCGTGCCCAGTGCCTGTCCTCCAGCACACTGGCCAGCCTCACAGGAGAGCCAGGCGACTGCTATGAGGAGATCTTTCAGTACGTGTGCCACGTGCTGCGCAAGGCCCGCCGCCGCTCCGCTGCCCTGTACCGCAGCCTGAGGGGCCGCCCACCACTTCCACCCCGCCACCGCACCCGCCACCACGCAGGTGCTGGAGGGGGAGGTGGGCAGGGGCAGCCACACCACGGGAATGGCCGCAGCAGGGACAGGCACTTGCACTCCTCCGTCTGTCCTCGTCACGGCCGTCTGGAGCACAGCACTCAGGCCCTGGTGGCCCCCATCGCGCTGGGCATGAACCCTGACTCTGAAACCTGCCCCCATTGCACACAGGCCCTATCACTCAGGGAGGGGGTGGGCTCcagggcggggtgggggggtaaccAGGATGAGCAGGAGGAGGGGGGCGTGGAGGGGACGAATGGGGAAGGCAGCCAATCGGccagggaggggagaggagaaggggaggaggaggaggaagaggaagaagaggaggatggGGAGGGCAAGAAGAGGAAGGTGAAGAAGAAGGGGTGCGGAGGGCAATGCAAGGAATTGTGGGATGAGATGCGCGCCAAGCTGTGGGGCATCCCAGAGGAGCTGACCAATGTGCTGGAGATTTGCAACATTGTGTTCACCAGCATGTTCGCCCTAGAGATGATCCTCAAGCTCACTGCCTTCGGCTTCTTCAGCTACCTAAGGAACCCCTACAACATCTTCGATGGCATCATTGTCATCATTAGtgtgtgtgagatcgTAGGCCAGTCTGACGGGGGCCTCTCTGTGCTCCGCACATTCCGTCTGCTGCGGGTGCTGAAGCTGGTACGCTTCATGCCAGCCCTGCGTCGGCAGCTGGTGGTGCTGATGAAGACCATGGACAATGTGGCCACCTTCTGCATGCTGCTCATGCTCTTCATCTTCATTTTCAGTATCCTGGGAATGCACATCTTTGGCTGTAAGTTCAGTCTGAAGACGGATGCGGGGGACACTGTCCCTGACCGCAAGAACTTCGACTCACTGCTCTGGGCCATCGTCACTGTCTTCCAGATCCTGACACAGGAGGACTGGAATGTGGTGCTGTATAATGTTCCCTCGCCCCCCTCTTCCCACACAGACCCCAAGATCTGCACCCTGACCCCCAACGGGCATCTGGAGACCGGACCCCTGCCATTGGCCAAGGCGGGGTACCCTGGCGAGAGGGTGCACCTGGCACTGGGGGCGCGGAAGAGCAGCGTCATCTCTCTGGGGTGTGCCAGCCTGGAGCAGAGGTCACTGtaCGCTGGTTGTAGTTCCCATTTCCACCATTGGGGGCACCCTCCCCAGTCCTTCTGGAGCAGGAGGTCGAGCTGGAACAGTCTGCGCAGGGCctctggggggctgggggggggtatgggaggaggagggggtagCATGTGTGGGGGCAGCATCCGCCAATGCAACCCCAACCCCAGCCAAGCCGAGCACGAGTCCCTGCTATCTGCCCCAttgccccctccccctgccTTGCTGTCCCGCCAtggccccccccacccccccatgccACCTGCCCCCCGCCGAGACAGGCGCGCCCTCTCCCTGGAGCTCCCTGAACTGCTGCAGGTCCCAGGGCCCAACCCTCGCCCAGCCCACGGTCCACCCCACCGCAAAAAGAGCTTTTCGGGGGTCCTGGGTGGGGGTGAGCACCAGGACTGTAATGGGAAAAGCCCGCAGCCCCCTCTCCTTGGGGAGGTGTACCCCCACCTCAACTCCCGCAAAGGAAGAGAGGAGTTGGAGGATGAGATCGactatATGATGGAGGTGTACAAGCCTGACTGGTGCGAGGCGAGAGACGACTGGTCTGTGTATCTCTTCTCCCCACAGAACAGgttcaGGCAGCTGTGTCAGAGCATCATCGCCCACAAGCTCTTTGATTACGTGGTCCTCGCTTTCATCTTCCTCAACTGCATCACCGTGGCTCTGGAGAGGCCCAAGATTCTCCAGGGTAGTCTGgAGCGGCTGTTCCTAACCATTTCCAACTACATCTTCACTGCGATCTTTGTGGCCGAGATGACGTTGAAGgTGGTGTCGATGGGGCTCTACCTGGGAGAACAGGCCTACCTCCGCAGCAGCTGGAACATCCTGGATGGTTTCCTGGTGTTTGTGTCCCTGATTGACATTGTGGTGTCCATGGCAGGCGGGGCCAAGATCCTGGGCGTGCTGCGTGTGCTGCGGCTGCTACGCACACTGCGCCCTCTCAGggtgatCAGTCGGGCTCCAGGTCTGAAGTTGGTGGTCGAGACTCTGATCTCATCCCTTAAACCAATCGGGAACATCGTGCTGATCTGTTGTGCCTTCTTCATCATCTTTGGCATCCTGGGGGTGCAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92178 lncRNA downstream 150571 37172930 ~ 37173171 (-) True G73803
TU92141 lncRNA downstream 307569 37015950 ~ 37016173 (-) True G73776
TU92083 lncRNA downstream 593181 36689357 ~ 36730561 (-) True G73722
TU92063 lncRNA downstream 671699 36646059 ~ 36652043 (-) True G73704
TU92025 lncRNA downstream 847794 36474243 ~ 36475948 (-) True G73667
TU92228 lncRNA upstream 158334 37518043 ~ 37518331 (-) True G73851
TU92230 lncRNA upstream 171761 37531470 ~ 37531976 (-) True G73853
TU92234 lncRNA upstream 214029 37573738 ~ 37574140 (-) True G73857
TU92243 lncRNA upstream 222057 37581766 ~ 37582162 (-) True G73866
TU92288 lncRNA upstream 323530 37683239 ~ 37683542 (-) True G73908
AMCG00014858 mRNA downstream 13925 37302224 ~ 37309817 (-) True AMCG00014858
AMCG00014854 mRNA downstream 208076 37080157 ~ 37115666 (-) True AMCG00014854
AMCG00014856 mRNA downstream 249974 37068871 ~ 37073768 (-) True AMCG00014856
AMCG00014855 mRNA downstream 276263 37044210 ~ 37047479 (-) True AMCG00014855
AMCG00014851 mRNA downstream 379003 36931007 ~ 36944739 (-) True AMCG00014851
AMCG00014859 mRNA upstream 57824 37417533 ~ 37421167 (-) True AMCG00014859
AMCG00014861 mRNA upstream 195180 37554889 ~ 37558209 (-) True AMCG00014861
AMCG00014860 mRNA upstream 242763 37602472 ~ 37616362 (-) True AMCG00014860
AMCG00014865 mRNA upstream 442385 37802094 ~ 37864483 (-) True AMCG00014865
AMCG00014866 mRNA upstream 511697 37871406 ~ 37887963 (-) True AMCG00014866
TU92007 other downstream 930249 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 1069555 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 1141391 36101358 ~ 36182351 (-) True G73604
TU91914 other downstream 1715065 35580626 ~ 35608677 (-) True AMCG00014839
TU91607 other downstream 2553763 34769583 ~ 34769979 (-) True G73328
TU92296 other upstream 419624 37779333 ~ 37783575 (-) True G73916
TU92499 other upstream 983613 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 1052451 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 1072554 38432263 ~ 38432875 (-) True G74115
TU92559 other upstream 1130614 38490323 ~ 38490940 (-) False AMCG00014891

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050131 False 7148 mRNA 0.51 35 NC_007114.7 29179329 ~ 29377750 (+)