RNA id: TU92314


Basic Information

Item Value
RNA id TU92314
length 1174
lncRNA type sense_over
GC content 0.37
exon number 1
gene id AMCG00014865
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37802094 ~ 37864483 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGGACTCGGCCCACCCCCCTGGTGACCTCCTGCCCCCCACAGGTTCGAAGGATAAGCCGGGGTTGGGCAAGGCAATCGATGATGACCCGTACATCCGCCCAAACCAGCCTGTGTGAACCCACCCTGGGGTCTGTTCACCCCTGCCATCAAGCCCAACTTACACTGGCCTGCATTGTATTACACTATaactattatattttacaatggaaTACAGTCAATATATTGGACAATGGAAGACAGATTACAGTCTTATATTGTATTACACTGTCtaacactgtaattacactgaTATTGTATTACACTTATATGGTATTTTACAACGGTAGTcaacagtgtaatacagtggaatagaattgattaaattcatacatTGCATTACATTGTTTCACACTCACATCGTATTAGTCTTAGTGTCTTATATTGATGTAAAAGGTACTACATGGTCTTATATTGTCCGACTCTGTGTTACTCAGTAGTGCTGAGCTGTTCTGCACACTTTACAGGCCCATCTCAACAATGTCAATACATATCAGAAGAAATCTATTATTTGGAATGCTtctatatacaatatttaaaaaaaaaatctcccacTTTTTAgcttataattgtattatgttttgatctgtactgtattattgcacttttgtattgctctaatattttgtaagtcgccctggataagatttctagttttataaattacattttataacgTTGTTTCACAAGGTTTTGGAGTGTACAGCAACCCTCTGCAATCGGTGTCTTGATAATGTCATACTGTCTGATCATCACTTTATCTTCTTAAGCAGAttaactgtgtgtatgtatgtttgcggggtggagggggggggtataaattcaattaatgtggtactgaattaaataatttgtgtgttgtgtgagctAGAAGAATGggcttactttgcatttagtttccTGATTTTCAACACCCAGTGAGCCTGTACTGGATTAAGTGGTTTTTGATAATGGGTGGATGGATAGAGTTTTCTATACCAAAGACCTGCAGGTATGCAGTACAGGCTATAATTGTCTGTATAACGGTATAAATCATTAACGATGCAGTGCGTCTGTACGgctctttgttttattgtatttgaccTTAGAATGTATAACTACGTAAATAAAATTCActtgcaatatttaaaaaccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92299 lncRNA downstream 16468 37826479 ~ 37826702 (-) True G73918
TU92297 lncRNA downstream 59595 37779333 ~ 37783575 (-) False G73916
TU92291 lncRNA downstream 139122 37703846 ~ 37704048 (-) True G73911
TU92288 lncRNA downstream 159628 37683239 ~ 37683542 (-) True G73908
TU92243 lncRNA downstream 261008 37581766 ~ 37582162 (-) True G73866
TU92368 lncRNA upstream 219004 38063347 ~ 38071617 (-) True G73980
TU92433 lncRNA upstream 333631 38177974 ~ 38180598 (-) True G74030
TU92434 lncRNA upstream 335704 38180047 ~ 38180598 (-) False G74030
TU92461 lncRNA upstream 437094 38281437 ~ 38283517 (-) True G74052
TU92512 lncRNA upstream 464742 38309085 ~ 38340216 (-) True G74093
AMCG00014860 mRNA downstream 226808 37602472 ~ 37616362 (-) True AMCG00014860
AMCG00014861 mRNA downstream 284961 37554889 ~ 37558209 (-) True AMCG00014861
AMCG00014859 mRNA downstream 422003 37417533 ~ 37421167 (-) True AMCG00014859
AMCG00014857 mRNA downstream 483461 37323742 ~ 37359709 (-) True AMCG00014857
AMCG00014858 mRNA downstream 533353 37302224 ~ 37309817 (-) True AMCG00014858
AMCG00014866 mRNA upstream 27063 37871406 ~ 37887963 (-) True AMCG00014866
AMCG00014871 mRNA upstream 100804 37945147 ~ 37954312 (-) True AMCG00014871
AMCG00014875 mRNA upstream 193020 38037363 ~ 38040051 (-) True AMCG00014875
AMCG00014874 mRNA upstream 203143 38047486 ~ 38052112 (-) True AMCG00014874
AMCG00014878 mRNA upstream 281700 38126043 ~ 38128745 (-) True AMCG00014878
TU92296 other downstream 59595 37779333 ~ 37783575 (-) True G73916
TU92209 other downstream 517863 37325020 ~ 37325307 (-) True G73833
TU92007 other downstream 1449677 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 1588983 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 1660819 36101358 ~ 36182351 (-) True G73604
TU92499 other upstream 498979 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 567817 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 587920 38432263 ~ 38432875 (-) True G74115
TU92559 other upstream 645980 38490323 ~ 38490940 (-) False AMCG00014891
TU92596 other upstream 753025 38597368 ~ 38644538 (-) False G74160

Expression Profile